AMCG00013892


Basic Information

Item Value
gene id AMCG00013892
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46150583 ~ 46155607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013892
CCGGCCCGCTCGCAGCCTCGTCCggggggtttgttttgttttcatccgGCAGCGTCGAGCGCACTCGGGGGTTAACGGATGGAGCGACCCGGCGCTACTTCTAGGTTCGCCGACAAACGGGTTTCCGTTGTTGGCAGAGGCCTTTGCAGGCAGTTCATCAGTGGGTGTTGCAGGTTTGGGCCAAGCTGTCACTTCTCTCACGAGTTGCCAGTATTGAAATCCCCTCAAATCTGCAAGTATTTCCAGAAAGGTGGCTGCTGGTTTGGAGAACGCTGCAGGTACCAGCATATCCTTCAGCCCGATGGGCGTGCTCCAGCGAGCAGACGTGGTTCGGCACCCGCCCTCCAACCCGCCTGGGGTGGCATGATGTTCCAGAATCGCCGTGGCTCGGAGCCTACCATCGCCCAGGCCCAGGGGGGCTACGCCAGGAGTCGCAGGGGGTCCGAGCCCCTGATGGCGAGCCTGGCCAGCCTGCAGCACGGCTTTGAGCGTCTGAGCATCGGGATCGCGGAGGAAGAGGAACAAGCTGCTGCCGAGGCGGTACCCCTGCGTCTGCAGCCCCAGGAGAGCGAGTGTCTGGGGTCGCACATGCGAAGAGGTCCCCTAGCATCACACACCGCAGCCCCTCTCTATGGCAGTGGGGCCGCATCCAGCTCTGCCCTGGCGCCTTGCCCTCCGGTTGTCCGAGTTGGTGTGGTAACGGTGGTACAAGAAAGCGGATCGGGTGCCGGGACACCGTGCTCACTGGAGTGCTCTAGCCAGCAGGGGGCATGTCCGAGCGGTGCAGAAGCCCCCCCCAGCAGAATACAGGCAGCGGGGTCCGCGGGAGAGGCCTACGAGCGCAGTAAAGACGTCACCTGCGGGATCTGCATGGACAAGGTGTTCGAGAAGCCCACCGCACAAGAGCGGCGCTTTGGCATCCTGCCCAACTGCAGCCATGCCTTCTGTCTGGGCTGCATTGTCACCTGGAGGAAGACCAAAGACTTCCAGGATGAGGTCATCAAGTCTTGTCCTCAGTGCAGAGTGATGTCTTCCTACTACATCCCTAACAAGTACTGGGTCAGCGATGGGGACCAAAAGGCAGCTCTTGTTGCCAGTTTCAAAGAGAAATGCAGCAAAATTAGGTGCAGTTTCTTCATGCGGCACGGGTGCTGTCCCTTCAAATCCGAGTGCATCTACCTACACGAGTTTCCCCGGGGATATCGACCTCGCCGGCGCCGCCGATCATCCAACCTGCCCTACCGCATGAGCCTGGATGACGCCCACAGCCACGGGctgcagctgcagctccagTACGTCATCGCCATGGCCCTGCTGGACGACCACGATGACGACGACATGCTGGAAGGATACTTTGAGCTCCTCATGGATGACTCTGACTCGTACTGAGCCTAGCAGGGATTCCCACCGTGTGCCCGCGGAGGGCCGAGGCAGCCCAGAGCCCAGCGCTAGTCCTACAGCCCATACATGCCATATGCCATCTGCTCTTGGTAGCTTAAGCAGGGAAGTCTGAAGGCTTTCCCAGCTTGATACTCTGCCCCTCTTTTAATATTCCACCCCCGGTCCTTTCTGTGGTCCCTGTTTTTTAAGCTACCTCATCCTACAGCAGGGACGCCATGGTCTCCCTTGACAAACACAACCTGGACTGATTTCTAACTTGCTTCCCAGTCTGTTCTGGTTTTTCCACCCCCGCCTTAACTGAGCAACTGACCTTTAACTTGGTCTTGTTTTATTCTCCAAATCCCGCATTTGGGTTTTTTAACAGTCCGCCTAACTTGTGTTTCTCTGAAATAGCCGTTGCACCGAATCTTTCAGTTGCCAAGGCGTACGGATCTCCGATTTTGAGCCAAAAGCGAGTCCTGGGCTGCCTCTGAAAATTAAACTCCTGAAGGGCAGGGGGTCCGTGTCCCATTTGTACGCTTGCAAAGTGGAGTAAAATGACGTGAATCCTGGCTGCTTGTGCACTGGGGGGGTGTGCTTGTGTAATCGTCACCTCTGATGGTTGGATGGCTTGTGTAGTTACACGGGTGAAGGAAGGTTGTTGGCAGAAGTTTCTAGTTGTCTATGATCTTGTTAATCCTCTTGTCACGTTGTTTATAtatcaaaaaaactaaatgaagaGCACCCATCTCTGTACTTTCTTGATACTCACTATAGTGGTCTGCAATTTTTAAGCTGAGCCCAGTGTTTGAGGTAAATcctgttaaatgtatattttccttcGGGTTGGACTCCTAGGTTTGATATGAGCAAGACCCCTCCCCGTTTAAATTCTAGAGCCTCCTTTTGGTTTGGGATGGAATACtaaagagatttgttttaatgtttaactcAAAATATTGTCTAGACTGTAAGGGGAAGCTGAACTTTAACAAGTGAAATCCGTTCAGCTTGCCCAGTTTGTCCCAATGCTGTGATTTTTAGGCTTCGGTCTCTTTCCCGTTCGAACTAGCCCTCCCTCATTCTGTATAAGAGCAGTGTTCTGAATCGGCAGGCGTTCTGAAGTACCCGTGTCATCCGTTAAATGCAGTGCTATAATGTGGTAGGCTTACTGTACTGACTGAGGGTGTCCtagacttttattatttttatatctgaTTGTATCCACGtaaagagaatgaaaataaaacctgtttcaCTACTTCTAATTTTGTCTGGTATTGTTCTGAAGCGACACCTGAAATGGCCATCTTCCATTTTTACATTGCATATAGACTAGTG

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013892 True 2721 mRNA 0.53 8 46150583 46155607

Neighbor

gene id symbol gene type direction distance location
AMCG00013894 ppard,LOC100136526,LOC107549971 coding upstream 5979 46133626 ~ 46144604 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding upstream 26902 46103988 ~ 46123681 (+)
AMCG00013885 NA coding upstream 103461 46037393 ~ 46047122 (+)
AMCG00013884 NA coding upstream 145116 45993213 ~ 46005467 (+)
AMCG00013880 NA coding upstream 171939 45976228 ~ 45978644 (+)
AMCG00013896 NA coding downstream 817 46156424 ~ 46160416 (+)
AMCG00013897 rpl10a,LOC105016832,LOC103141192 coding downstream 5021 46160628 ~ 46163499 (+)
AMCG00013893 NA coding downstream 10044 46165651 ~ 46176881 (+)
AMCG00013899 NA coding downstream 23534 46179141 ~ 46197897 (+)
AMCG00013900 NA coding downstream 44107 46199714 ~ 46207783 (+)
G47390 NA non-coding upstream 228685 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 244184 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 247398 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 295814 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 323931 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 141026 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 263525 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 774860 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 814131 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 819909 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 191389 45943571 ~ 45959194 (+)
G47398 NA other upstream 208677 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 327355 45816372 ~ 45823228 (+)
G47206 NA other upstream 789701 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1054914 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 881488 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1064312 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1596607 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2084093 48239700 ~ 48258433 (+)
G48018 NA other downstream 2113147 48268754 ~ 48269272 (+)

Expression


Co-expression Network