AMCG00013895 (def6,LOC107757990,LOC107550223,LOC107700524)


Basic Information

Item Value
gene id AMCG00013895
gene name def6,LOC107757990,LOC107550223,LOC107700524
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46103988 ~ 46123681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013895
TCTGTGGCAGGTCTGCGTTTCTACAGATCTGTGAgcgagaaaaaaagaaacagaaaagagtgagggagagagagagcgagagagagagtcatgCCGCAGCAGTAATGGAGCTACGAGCGGAGTTACTGAAGTCTATCTGGTATGCTTTCACTGCTCTAGATGTGGAGAAGAGTGGGAAGGTCTCCAAGTCACAGCTCAAGgTTCTCTCCCACAACTTGTGCACCGTGCTGAGTATCCCCCATGACCCAGTGGCCCTGGAAGAGCACTTTCGGGACGATGATGACGGCCCTGTGTCAAGCCAGGGTTACATGCCCTACCTTAACAAGTACATCCTGGATAAGGTGGAGGAGGGCGCCTTCGTGAAGGAGAACTTCGACGAGCTGTGCTGGACGCTCACGGCCAAGAAGAATTACCGGCCCGAGAAGAACGGCAAGAGTGTCCTCCTCATGCGGGACGCCTTCCGCCTCTGGTGCCTCTTCAACTTCCTGTCCGAGGACAAGTACCCCCTGGTCATGGTGCCGGATGAGGTGGAGTACCTGCTCAAGAAGGTGTGCATGGCCATGAGTGTGGAGCTGAACTGTGTGGAGCTGGAGGACTACATCTCCCAGGAGGCCGTGCAGCAGACCGGCATCACCGTGTGGGTCTTCCTGGACCTGGTGAACTCGGGGAAGCTGATGCGGGGCATGGACAAGGACACAGTCAGCATGGCCATCGAGGAGGTGTACCGGGAGATCGTGCAGGACGTGCTTAAAGAGGGCTACCTGTGGAAGAGAGGACAGCTGCGGAGGAACTGGACGGAGCGCTGGTTCACCTTGCGGCCCAGCACCTTGGCATATTTCGTCAGCGAGGACCGCAAGGACCGCAAGGGCAGCATCCCCCTGGACAGGAACTGCTGCGTGGAGGTCCTTCCGGACAAGGACGGGAAGCGCTGTATGTTCTGTGTGAAGACGCCAGCCAAGACCTATGAGATGAGCGCCTCGGACACCAAGCAGCGCCAGGAGTGGAccacagCCATCCAGACAGCGATCCGGCTGCAGGCTGAGGGCAAGTCCTCGCTCCACAAGGACCTGAAGCTGAAGCGGCGGGATCAGCGTGAGCAGCGCGAGCGGCGGCGGGCGGCCAAGGAGGAGGAGCTGGCGCGgctgcgggcgctgcaggaggagaaggagcacaagctgcaggagctggagctgcTGAAGGAGGCGCAGCGGCAGGCCGAGGCGCTGCTGAGGGAGGACGAGCAGCGGCGGAGGGAGCAGCATGAGGAGCTGCAGAGGGCACTGGAGGTGCAGCTCCGCGAGGCCGAGGAGAAACGCATcaaggagctggaggagatgCAGCAGCGGCTGGAGGAGGCCCTGCACCTGGAGATCAAGGCCCGGCAGGATGAGGAGGCCTTCCGCTACGCACAGGCCAGACTGctggcggaggaggaggagaagctcAAGGCTCTGATGTCCCTgaaggaggagcaggaggagtaCATCCTGAAGACCCAGCGGGAGAAGCAGGAGCTCAAGCAGGAGATGGAAAACAAGTCCCGGTCCCTGGAGGAGGCCACGCGGCAACTGGAAGAGGTCCGGGCCAACCGGCACCGCGTCGACCAGGACGTCGTGGCCGCTCAGAGGAAGCTTCGCCAGGCCAGCACCAACGTCAAGCACTGGAACGTGCAGATGAACCGGCTGATGCACCCCATTGGACCTGGAGAGAAGAGGCCGACCATCGGGAGCGGTTTCTCCAGTTTCCGGGTGCCCACGCAGAAGGACCCCGGCCTGAAACTGAGGCAGAGATCGGAAGAGAAAGACGAAGAGAGCAAGGAGAACGTGGACAGCAGCGCGCTGGCCAAACGTCTATCCCACGCCTCCGACAGCGACATGGACACTCTGCCCTGAGTCACCTGCCCTCACGGACCGCTCCGGTTCGGGCCGAGACCTAACAGACCCCCCACTGCACAGGACTTCCATTCAGGCTAAAGACGTGAAACAAGAAGGAACATGTTGTTAcctattctttgtttttttatttctgcatgtGCTGTTGATTTAGTGTAACTACATTAGCagccttttaaataattttataatttcatttgtttgtttgctggctGCTGCACATTTGCTTTCTCTTGCTCCTCACGGTCATGTATTTATCAGGAGTCTTTGATAATCAGAAAAACTCAAACGGACGGACTTTGTTTTCTCCCCCCAGACCCCTCACAGAGGAGGAGTTACAAGGGGGTCATGTTGTCTTCTTTAGTGTGTCTGACATCCTGATTGGTCAAGTTGTCCGGACCTCTGAAGCCACTGGAGGAGACATGACCGCACTTGagtgtaattaaaaatcaaGTTGAAATGTTGGCATTTGTAAAATCTCTTCAATGGtaacttttactttttaaattgcaaagttataattgtaaaaaactTAAAGgttatgtaaaatgaaaat

Function

symbol description
def6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: differentially expressed in FDCP 6 homolog

GO: NA

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013895 True 2448 mRNA 0.56 11 46103988 46123681

Neighbor

gene id symbol gene type direction distance location
AMCG00013885 NA coding upstream 56866 46037393 ~ 46047122 (+)
AMCG00013884 NA coding upstream 98521 45993213 ~ 46005467 (+)
AMCG00013880 NA coding upstream 125344 45976228 ~ 45978644 (+)
AMCG00013881 NA coding upstream 202407 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 210093 45889295 ~ 45893895 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 9945 46133626 ~ 46144604 (+)
AMCG00013892 NA coding downstream 26902 46150583 ~ 46155607 (+)
AMCG00013896 NA coding downstream 32743 46156424 ~ 46160416 (+)
AMCG00013897 rpl10a,LOC105016832,LOC103141192 coding downstream 36947 46160628 ~ 46163499 (+)
AMCG00013893 NA coding downstream 41970 46165651 ~ 46176881 (+)
G47390 NA non-coding upstream 182090 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 197589 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 200803 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 249219 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 277336 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 172952 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 295451 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 806786 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 846057 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 851835 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 144794 45943571 ~ 45959194 (+)
G47398 NA other upstream 162082 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 280760 45816372 ~ 45823228 (+)
G47206 NA other upstream 743106 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1008319 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 913414 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1096238 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1628533 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2116019 48239700 ~ 48258433 (+)
G48018 NA other downstream 2145073 48268754 ~ 48269272 (+)

Expression


Co-expression Network