AMCG00013903


Basic Information

Item Value
gene id AMCG00013903
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46299161 ~ 46311118 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013903
aTGGATGGTGGGGAGCTGTTCAGTCGCATCCAAGACAGAGGAGACCAGGCCTTCACTGAAAGAGAGGCTTCTGACATCATGAAGAGCATAGGCGAGGCCATCCAGTTCCTGCACGCGGTCAACATTGCCCACAGAGACGTGAAGCCAGAGAACCTGTTATATACCTCCAAACGGCCCAACGCTGTCCTGAAACTGACGGACTTCGGGTTTGCCAAAGAAACCACTACACACAACTCCCTGGCCACTCCGTGCTACACGCCGCTCTGTGGATACCCGCCTTTCTATTCCAACCACGGCCTGGCCATCTCCCCCGGGATGAAGAAGAGGATCCGCATGGGCCAGTATGAGTTCCCCAATCCCGAGTGGTCGGAGGTCTCGGAGGAAGCCAAGCGGTTGATCAGACATCTGCTGAAGACTGAGCCCACACAGAGGATGACGATAACAGAGTTCATGAACCACCCCTGGATCAATGAGGAAATGACCAGCGCCTTGGCCACCATGAGAGTGGACTACGAACAGATCAAGATCAAGACGATTCAAGATGCCACCAACCCCCTGCtgatgaagaggaggaagaagaacaCGGCCGAGGAGGCTCCGGCCCTCTGA
>TU59342
CGTCGTATGACgacttcctgtttttcttttgtcgTAGGAGGAAATGACCAGCGCCTTGGCCACCATGAGAGTGGACTACGAACAGATCAAGATCAAGACGATTCAAGATGCCACCAACCCCCTGCtgatgaagaggaggaagaagaacaCGGCCGAGGAGGCTCCGGCCCTCTGAGCAGCCAGTAGCCACAGCCACGCACTCGCACCCCAAGCAATAATCATTACaagaaaaagagaggaaaaaaaaacatgcaagtcAGACTCAGTTATAAACGCATggattttcataaatgtataaacagttaggattttattttccttaattttttttaagcgatttttatttttattactcaCTCGATCTCTTCGATGAGTCAAGCACTCGTGCGATGGGATGGCTAGAGGGCCTGGAGGCGACAGATACCGGCTTTGCAGGGCCACGACCGGAGGGGACTAAGAGGAGATAGTTTTGATAAATGATGCAGATTTCATTGTTAATATttctattttcatattttgttcttgCTTTACTGCCCATCGGGGGGCAGAAGGGAGTTCAGCCCCAACCCCAGCTCCCACTtaagTCGGACGATGCAAGAAGAGGATGTCGCTCTGCTGTGGATTGACAGGGTCTCAATTGTCTGGTCCTTCAGGCACGAGACGATGGTAGTCCTGTGCATGTCTGTGGGGCGCTCCACTCCCACGGTCAGCTGGGGGTGGGATTCCACGCGGCGCGGCTGTGTCGTAGCCAAGGTCTGCACTGGGCTTGGAGGCCCGCTTCCTTCCACGCGCGTCAGTGAAGAAGATGCCTTTGCCTTCGTCATCCTCCAGaacatgagagagagatgagTTTCTGACTCGGGggattttttgttctgtttcgtTTCATGTATCGGTGGCGCATGCCAAATTGTATATTCTTTCCCAACTGGTGTGTTTTACGGTATTTGTTTTGACTCTatagcattttatcatttttaaatttagttttttggtcaTAAGTGGAGTTGAGGGACGGCCAGTAGGCTTTCCAGTCCAACGTTGTCTGTCATTGTACAAACGAGCATTAAAACGCTCCGGCCACACGGGACGTGTGCCCTGTGTAACTCCGGGATCTTGAAAACTGTGCGGCGCACTTGCTTGTCTCTTGGCTGTGTCTCTGGCCTTGAATAAATGTGCGCTGGGAAAGAATGGAGACGGCGAGGGGGATTTTGGTCACTTTGGTTGCCAAATATTGCATTAAACTTCTCAGTTTTTATAATCCCTCTGTCTGTACCGGAGAGGACAGAGTGGGAGGGGCTTTTTGAAGGTCCTGGTGCagtcatataatatatatatatatatatataccttttaATTTTGAGAGGGTTGAATTGATACAACATtgtgctttaaaattaaatacaaaagaaaacttTAGATATACCACAGAACGTCTCTGACGAGTAGTGTTcacattttgaatgtatattttgtgcTTGGCAAGGATCTACGAGTTATAACGTCCGTGTGGGCTTCAGCATGATCTCGAGACCTACAGCAGCCATAGATGAATGCCAGCTGCCACATCCGGAGCAGGGAAGTCAGCCCAAGCCAGTCTCGCAGTGGAAGGCATCAGGTGTGTGGCATGACCACGCCAGCCAGGGGCAGGCCGACTCCGTGTGGTCATCTCCTCCGTCCCGTTCTCTTTCTCCAGCTGCTCAGTGAGAAGTGTGCacctccatccatccatccatctggTTTCCTGATGGGTTCTGGCCTTCAGAGGTGGCTGAAGCCTGGTTTAACCACCGCTTTTGATGATCTATGTCCTACTAAAACAAACTGACTAAAGTACCAATGACAATTCCTGACACAAGCTTGTGGCGATTGTGTTGCCAGTGGTTGGCTTGGAAGGCCGTAGTGGTGGTCGTTTCATGGATCACCAGCTCCATGAtcttcaatttttattttattttagtatatttCCAAAGTTTTCTACCAGAGACCTTTCATGGCACCTACATTGAAACGGCACCCGGGCAAAGCATTAAAGGGACTTCCTTCAGCAGTATTGCTACTTTAAACGAACCGTCTGAGCCATAGCTCCAATGGGACACTTTGAGTCAAAATAACTACGGCCTGGTTAACCAGTCACCCCCCAGGAATGGGATTTCTCCCGTTTGTCACTGGATGACACACCAGAGTAATGGggttcagtctttttttttttttttttttttttgttcccacATTTTTATGATAGTTTTCAGTTTGCAAGTGCATTCTTTAGTGGAATTAATTTCAAGAAATGTAAAAGAATTATGACCACTAATTAGTGtaatttctctttgttttctgttgtctgCCTTCACAGCagtgttggtgttttttctttctccaataTGAAAGAAGCACAGTtgcatcttttgttttgttttttgatttaatGTCAAACTGCTGTACTAATGTCCAGGTCTGCTTTTACTTCGGATTAAAACACTTAAACGAAACAAGGAT

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013903 False 609 mRNA 0.55 6 46302526 46311118
TU59342 True 2499 lncRNA 0.45 2 46299161 46302700

Neighbor

gene id symbol gene type direction distance location
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding downstream 196545 46094540 ~ 46102616 (-)
AMCG00013891 NA coding downstream 211383 46087083 ~ 46087778 (-)
AMCG00013888 NA coding downstream 224733 46050593 ~ 46074428 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding downstream 260280 46028415 ~ 46038881 (-)
AMCG00013886 kctd20,LOC106572174 coding downstream 276137 46009104 ~ 46023024 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 73564 46384682 ~ 46386241 (-)
AMCG00013908 NA coding upstream 77036 46388154 ~ 46389618 (-)
AMCG00013907 NA coding upstream 93706 46404824 ~ 46406931 (-)
AMCG00013906 NA coding upstream 140946 46452064 ~ 46465408 (-)
AMCG00013910 srgap2 coding upstream 159253 46470371 ~ 46507717 (-)
G47538 NA non-coding downstream 60647 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 376247 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 444361 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 470910 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 472507 45825723 ~ 45826654 (-)
G47661 NA non-coding upstream 492493 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 746421 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 760225 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 914683 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 1184293 47495411 ~ 47495684 (-)
G47501 NA other downstream 135674 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 215619 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 324850 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 370852 45919636 ~ 45928309 (-)
G47261 NA other downstream 675266 45623238 ~ 45623895 (-)
G47666 NA other upstream 560751 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 877477 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1553732 47864850 ~ 47868863 (-)
G47896 NA other upstream 1656307 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 2054925 48366043 ~ 48375096 (-)

Expression


Co-expression Network