AMCG00013909 (fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400)


Basic Information

Item Value
gene id AMCG00013909
gene name fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46553031 ~ 46557951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013909
cagaaaacaaatccagaCGCGCACAATGCCAGCGCCGCGAATAAATCTGTGACACAACAAGGTTAGATAGTTGGCGTTGGCAGATATTACACCTTGTGCATCCCGCGACAGTTGCAGGTCTGTTGTTAATGcgtagaaacaaataaaaagcagacaTTAACCGGTAAAGGTAACTTTCTGTTGTGTACATTTTACTGTGAGGGTTGTTGACCTTTAAAGCCGTGCATGACCTAACTTGCTGTGTGCATGGTAAATAACGGCAACTAACCGGTAAATAACGGGTAACTAACGGCGCTGGCTGCTTCTGCGTCATCCTGAACGGGCGTGCGGCTGCTTTGGTGTTTGAAGGCAGGGTGTGATCTGGGCATTGCTTTCTGAAGGCTGCGCAGAATATTAATGATCATAATCATGTCCACTTCcaccttcaaaaacaaatgcgTCACCCTGGTGTGCTGCAAGTTCTGCGACAGCGTGCTGTGCAGCCGCGGCATGAAGGCGGTGCTGCTGGCCGACACCGAGGTCGAGCTGTTCTCCACCGACATCCCCCCCAACAGCACTGTCGACTTCGTTGCAAGTTGCTACTGTACAGAAAGCTGCAAATGCAAACTGAAAGACATCGCATGTTTGAAGTGCGGCAACATTGTCGGCTATCACGTGGTGGCTCCTTGCAAGCCCTGCCTGTTGTCCTGTAACAATGGCCACTTCTGGATGTTTCACAGCGACTCTGTGTCCACGATCAACAGGCTGGACGCGTCAGGGCTGAACCTCCTGCTCTGGGGTGACCTGCCGGAGACGGAGAGCAGCGAGGACGAGGCGATGGGTTGTCTGTCGGACGAGGAGTACATCCGGTAGAGGAGCCACACCTCGGGGGGGAGATGCCGGCCTTCGTCCATGTGCAGGACAAGAAAGCGCATTCTCTCGGGTCGCTCCTCTCCCTGGACATTCGTCGAGACCCAAAGTACTGTAATCAAGATTgtgtacagatttattttttattattcacagtAATATATGAGAGatgaagaaatgttttttttttgtatttatttatttttaagaaatcgATAAACCACGTTCGTTCAGGTGTGCGATCGGTGCCGGAACACAAACTGCTTTTGATCTGATCTGTATTCGAACCACAAGCACTTTCCAGTTGGTTTGGGCGGATTCATGAAAATCGCTAATCTTGAAAGATCATAATCTCATATCTGATGTCGTGGACGGGTGGGGTGGTCACTCGGAGACATCAAAAACACATACCTGGGAGGAGAACAAGACAGATTTATTTACGGGGGTGGATCCCATTTGAGGAGTCTTTGCAGACATGTTGTATTGATACACTATGTGTGTCCTGATCAGTGTCTCGCATCACTTCCTTTCACAATGCAGATATACACCTGTGCATGTCAGCGTGCGCTTCGGTAGTGCActgttactattattttattttaataagcatgGATTGAAGATTCTCAGGCAATCAGGAATTTcattgattatatataaataaagttttgCCGAATGTCCTGCAGCTGGTTTCGCAGCCCTTAATGAAATTGGACGACTCTACCTACAATAACAGTAGAAAGCCCAAGACTGGTGCTGATCGGGATCTGTGAACCCAGTCCTCATAGTAAAGGCCGTCTGAAGACTAATTATTCCTGTCGAATCTGTGATCGATCCTGCTGTGTAGCTTCCCTCACTTTTCAGCGGTTGAGAAGAAAATCATCCAAGAGTGATGCGTTGAAGGAGAAGCGACGGTGGTGATTTTGATGTGACGGATCTCTGTTATTACAACTGTGTTCGCCTGGCAAGATGAACGCTGGGTGTGGGCTcgatctgaattattttaattaatcacatcATCGTGagtctgtaatttaatttagagaTGTGACAGATCCTTTTAACCAACTGTCTGTCTGTAAAATTGCCCAGAGTTGCACTTTGGTTTTACATCAGAAGGGAGGGAATATTGGCAACGTGGCTAATCTGAAAAGTATCTGCAATCTAATTgagtatatagatatatatatagtatttattagTTTTGCATTGGGACATGTGACCATATTGTCGCACTTCAGTAGCTTTTGCTTTTTGCATTCACAGGCTTTAGGAAAAGCACAGGAAATCACATTGTCTTTTAATCTCGGCCGATCGAAGTCCCCCAAATGAGGCCTGCCCGTTGCTCGGGCATAAAGCGGCTCTCCGTTATCTCCGCATTATCGCACTGCGGCCTTTTCTCAATTTTTCTATGTAAATTAGTTTCTTTTTCTAGATTTGTTCACAGAATTGAAATTGCTTTCAAATGCCTGGTGCGGTTTTTAAAGTTGGGATTAGTCCCAAATAAGGGGAGGCATTCATTCTGTACTAATCTGAAGACGTACAGTGCAGACACCACACTGAGGGGATACTGACCGCGTCTGTGTGGCTAACAGCAAGTGTGAATTACAACTGACTGTGTATTAAAACTAGATCCACGTGTGAACAGGACATTTTAAGTTGTGTTGCATTAAATCTCGACAGAATTAGTTTTTTTAGGCATTTATTTGAGATTTATATCCTAttctgcagtgtgttgtgtttgttttctgttgtgttgatctatttctttttattgctcatgatgtaaatattttgttgCTGGAGTTAAATCTGGGTTCATCGACTTgcttaaaacctttttt

Function

symbol description
zgc:101564 Predicted to be active in cytosol. Orthologous to several human genes including FAM72A (family with sequence similarity 72 member A).
fam72a Predicted to act upstream of or within negative regulation of brain-derived neurotrophic factor-activated receptor activity and positive regulation of apoptotic process. Located in cytosol and intracellular membrane-bounded organelle.

NR:

description
PREDICTED: protein FAM72A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013909 True 2690 mRNA 0.44 4 46553031 46557951

Neighbor

gene id symbol gene type direction distance location
AMCG00013904 NA coding upstream 148346 46393809 ~ 46404685 (+)
AMCG00013902 NA coding upstream 282212 46259978 ~ 46270819 (+)
AMCG00013901 NA coding upstream 335820 46215736 ~ 46217211 (+)
AMCG00013900 NA coding upstream 345248 46199714 ~ 46207783 (+)
AMCG00013899 NA coding upstream 355134 46179141 ~ 46197897 (+)
AMCG00013913 NA coding downstream 186030 46743981 ~ 46752657 (+)
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding downstream 238091 46796042 ~ 46837010 (+)
AMCG00013912 LOC106565692 coding downstream 300689 46858640 ~ 46870713 (+)
AMCG00013918 NA coding downstream 452341 47010292 ~ 47012262 (+)
AMCG00013923 NA coding downstream 468534 47026485 ~ 47026974 (+)
G47580 NA non-coding upstream 82560 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 250162 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 631133 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 646632 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 649846 45901867 ~ 45903185 (+)
G47669 NA non-coding downstream 372516 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 411787 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 417565 46975516 ~ 46976186 (+)
G47728 NA non-coding downstream 589404 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 674103 47232054 ~ 47248989 (+)
AMCG00013879 dennd2d other upstream 593837 45943571 ~ 45959194 (+)
G47398 NA other upstream 611125 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 729803 45816372 ~ 45823228 (+)
G47206 NA other upstream 1192149 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1457362 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 479144 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 661968 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1194263 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1681749 48239700 ~ 48258433 (+)
G48018 NA other downstream 1710803 48268754 ~ 48269272 (+)

Expression


Co-expression Network