AMCG00013914


Basic Information

Item Value
gene id AMCG00013914
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46930575 ~ 46946388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013914
ATGGCGCTGCCCCGTGACCGCCCCGCGCCCCGTGTCCCCGGACTCCCTCCCCGGCCCCCCAGGACCCCCGTATCCACCCCCCACCCGCCCGGCGCCATGGCGTCCCGGATCGGCCTACGCCTGCAGCTCATGCGTGACCAGTTGCAGCAAGAGGAGCAGCGGGAGCGGGAACAGCAGCAGGCGGCTGCCCTGCACTACATGCAGCAGCGCATGCCTGTGCCGGCCACGCCCGCCATCAACGCCCCAGCGCACTTTCCCACGCCCATGCAGGTGCCTGTGGAGGTGCTCAAGGTGCAGACCCACCTGGAGAACCCCACCAAGTACCACATCCAGCAGTCGCAGCGGCAGCAGGTGAAGCAGTACCTGTCCACCACCTTTGCCACCAAGCAGGCCGTGCACGCCGTGACGGGGGTGCAGCCCTCGCCCCCGCCCCCCGGGCCCTCACCCTGCATGCGGACCGAGCAGCTCATCAACCACTCGGCAGGCAACAGCGCTCCCAACAGCCCCATGGCCCTGCTGAACATCGGCTCCAGCCACGAGAAGGAGGTGTGTCCGTCTGAGCTCAACAGCCCCGCGCTGAGCATGGACGAAGTCATCGATGACATCATCAGTCTGGAGTCCAGCTACAATGATGACATACAGGCCTATGTTGACCCCGTGGTTCAAATGTCAAACACACTGCCCCTGTCCAGCAGCCATTTAGATGTGTACGCCGCCCCTGGGGGCATCGCTGGCCCCACCATCGCCATGACCAGCAACTCCTGCCCCGCCAACCTTGCCATCAAAAGGGAAATGTCGGATGCAGAAGCCCGTGCTCTGGCAAAGGAGAGGCAGAAGAAGGACAATCACAACCTGATCGAGAGAAGACGGAGGTTCAACATCAATGACCGAATCAAAGAGCTGGGCACGATGATCCCCAAGACTAACGATCTGGACGTTCGCTGGAACAAGGGAACCATCCTCAAGGCGTCCGTGGAGTACATCAAGAAAATGCAGAAAGATGTGCAGAGATCGCGGGAGGTGGAGAACAACTTCAAGAGGATGGAGATGGCCAACAAGCAGCTGTGGCTTCGGATTCAGGAGCTGGAGATGCAAGCCCGGATGCACGGCCTTCCCAGCAACTCCCCCTCCGGGATGGGCCATGCGGAGCTGCTCAACTCCCTGGTGAAGCAGGAGACCAGCCCCGAGGAGAAGCCCTGCGTGGACGGCCTGCCCCCTCCCCAGCACCAACAGCACCCAccccagcagcaccagcagcacaCGCCTCAGCAACACCCGATGGAGAACCACCAGCCAGGGCCGCTGCAGTACCCATCAGTGGGCAGCTCCCAGCACTTTGACTTTGCGCAGACACTGGACTTGTGCGACAGCGCAGTGGGCTACCCGGACACCCTGTCCCAGCTCACCGACCTGTCCTTCACCTCCCCGGAGGGCAACAAGAAGGATCTGGGCTTCATGCTCATGGATGAGGCGCTGTCCCCGCTGGGGGGCGACCCGCTGCTGTCCGCCATGTCCCCCGAGGAGTCCGTGGACAGCAGCCGCCGCAGCAGCTTCAGCATGGAGGACGACATCCTGTGACACTCCCCCACGCCGTGCCCCACGCACACCCCTGCGAACCGCCAACCCCCTCTCCGCCGTAGCACTGACTGCActcgtttgtttttgtttttactttttacgtGCCCGTGTGTGCTTTTGAGTGTCCTCTGTAGGGAAaccgcacatgcacacacacacacacacacacgcacacactcgtacacacacagccaaagcagTACAGACACAGCGTCACTGCCCGCCAACCTCCGCAGTAGCAGACCCACTTTCTTTAACGCCTCATCCGTTGTTATCGCGCCTCGAAAACAGCGATTGATTTTACTGTTCCCACAGAAGTCGCTCCTTCCTGTGCGCCCCCGTGACCGCCTCCCAGTCAGGCAGTCGGGCGCGAATGAATGTAAGGCTTCAAAACTGAATTGagggaaatatacatttacgtttttagttttaattttttttttacaactggcagctttttgtgtttgtgatccGATAAGAGCAGGGAAGTCGTCCCGAGTCGTCCCACTGAAGTGATGGCCGCTCGAAGGCCCCTGTTCACGAGGTAGCTAGAGAGTCTCTCTCAGACCGACAGTATTGCCCCAATACTCGAGCTCACGTATTAGGTGGGTAATTCTCAGGACTTCATTCCAGAGAAAAGGGGTCTTCAAACACCCATCTAACTCCACATGTATTGATCCACGgtcaatacaattaatttattactgTGGTTAAATGCCACACTTAAAAAGGTGTGATCTTTATAAGGCCCTGAGGACTAAACCCCCGAAAATTACCAGGAGGCACAACACCTCTCAAAAGGGATTGATCTCGGTAGGACTGGTCTGAAACAGGGCCTTCAGTGACGTCAGATTTTTATCAGGTTGGTCTGGGTGCTGAGATACTTGTGCTGAATGATTTTAGCATCAGCAGGATGCGAAGCTATGCCAATTTAACATAGTGGCCAGTTTTTTAACTTATATGCctagaaatacatatttggactGTTTTGAAtagcatttatgtttttgtttttttctcccaaagcactggaaatgtaattttgtgttaaaaaatttaaaagaaaaaaaaaaaaagaaaagaaaaaagtttaaaaaaaaacaaaaaaaacctgcgGGCTTGTGTACACTGTTGAACCTCCGGATTATATTTGACttgcgtttttatttttgttttttattttattcctcaagtgacctttttttgtatttggaaatATTTAACCAATAACCCAATCCTGTTCACTCAGGACTGATGACCTCGTCCCAGAAACAGAGtcatgtatttgtaatttttacagtgattgttttgtttttgtttttttaaacatataggTCTTTTAAATCCAAAAAGAAATCCCAGATGAATGGTAATTCTTCGATTATATTCTGCTATAAATGAGCTTtgtgaatgtgatttttttgttagCCAACGTTGATAGTTTTGcaggttttgtttcagttcccacaatgcacctcgTACCGGTACAGCAACGGAGTCAGGGCTAGTTATAgcgcaataaaataaaaacacaaacatattccTCCACTGACAGATTTGCCCCATGCTGGTAGAAACTATAGCAGCATTAAATCACTCTGTTGAAGAAATAAATTCACAAAAAGCCCGTCAGCCAGTTAAAAATCACCTTCAGCAGCAGAGTGGACTTTTGTCTATTACTACACAATCTTGCCTATCCTTGTCAGATCCCCCCCCACCCGCGCTgacatgttttcttgtttttattcagcTTTCAATTGGACAGCTTCCTTTTTACCCCAGTGTTACAGCAATGCCTTCATCCACGTATGATTCCGTTCACATCAAATCCTCGACCGGGTGTTGAGAAGCAGTCTGACTTTGATCCTGCTGTACACAACCGTTCTGTCTTCGGGTTGTCTCTGCGTTGTTGTTGTAGTTCTTTTGGACAGAATAATCCCAGGAATGACAGGCTTGATGTCGAGCGCTCAGCCCGTGTCCCACCTGGACTGTATCGGTTGTTTAATCTGCAATTAATCTCAGTCCGGTGATACAGATTGCTTTTGTACGTTTATTTTGTACACCCTGCGTTTTGAAAGCTCAGAGGTTGTCTTTGCCTCCGGATGCAGTTGGGTCCTTCGCTCGGCAGGTTCTCCAGGTAGTGGACTGTTTTTCGCGGTGAAAACCTTAATTGCCGATGAGAAATAAAGCTGAGTCTTTGATCGTTGGTCTGGATTACCAGCACTGCGACCTCGTGATCCCGGCTCATACCGTCAGAACCTCATACTAGGAGAACATACTCAAAACCTGCCAATTAAAATATGGCATTGCTTTGTCTTTCCCTCCATCTTGCCGTGTTTATGCCAACTGACCCAATTGTTCACTCTTTCGAGGACACACTTATTTGCATTTCCCTCTGAATCACGTTTGTTAGTTTATAATgggaattaatacaaaataaatgcagagtAAAACTGAAAAACGAATCCATGAAAGGATATCTCAGGTACTTGCCTGGAGCAGCAGTGAGGGGAAGCGGCCAGCCAGGCTCTATGCAAGTTGTAGTGACACTGCTGATCCACAGGGGGGCAatatcaattaagcaattatggAAAGtgactttattttgttctgtatcaatgtatatatgaattCCCCTGCCTTTCTTCAGCTCGCGGCCTTGGTGTGTTCCTGTGCGAgttgtgctgtattttaatcctgtgtttgttgttttttgagcCCAATGTGACAGCTCTTACTAGCCCTGGTTCATGTCATGTCTGCCTTCTTTACACCTGCCCTCCTCAGCTCTATAGGACAGCTGACATTAAACGCTCTATTGCCTGTGgcgaaagaaaatgtattttaaatccaCTGTCTACTGATTGATTTCTCGTATCTGCTGTGTTCACTGCGGTACCCAGACCCCTCAATTCAAACTGTGAAAGAACGACACAAAACTGATCACAACCGCCTCACACGGccgacacatacacacaactcTGAGCGAGTCACTCCTGCAATATCCGATCACACATCACAGTCACTAACAGCCTAAATTCATACTGGACGGCCCACTGTTTTAAAGTGTTGCCATGTCAATAATAATGCGTGATTCTAAGCCCAGAATCCTTAGCAGCTGCCAGCTGATGACAGCCTCTCTGCAGTAGTGATTTAGGGAACAACAATCCATTGGATAGACCTAGAGTGTGGCGGGGGTTAACTTCTCAGATCACACAAACCCCCACACGGGTGCTGCAGGACGGTCAGCTGGCTCTCAGGGCAACACGTGCATAGACAAAGTGCAGAATGAGATAAAATCATGTTAAAGCACACCTGGCAAAAGCAAGGATTGTGATTGGCCGATGTAGGTTTGCAGTGGATGAAAATGACTTTTTGGACATTCCTAATTGATGGGGCGAAAAAAAGATCTTGTGCGCAAGAGAGTCGAAATGAAAGCAAATTTGGGTATTtgactaaaatgaaaaagacagtGGACTAAATACACCAAATTCTTAGTGTAACGCTGACTTTACAAACCAAACATGAATCAGTTCGAACACAGCAGATAAAATGCTTGGAAAATGAATtgtcttgtaaaaaaaaaacaaaaaaaaaaacattttgtatttatgtagtgtctggtatttattttttaatttatatgaaatatattttctttctggcAGAAAAATTCAGCTGTAACTTTCAATAAATGGTGCCATATTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K15590 TFEB; transcription factor EB

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013914 True 5286 mRNA 0.49 9 46930575 46946388

Neighbor

gene id symbol gene type direction distance location
AMCG00013910 srgap2 coding downstream 422858 46470371 ~ 46507717 (-)
AMCG00013906 NA coding downstream 465167 46452064 ~ 46465408 (-)
AMCG00013907 NA coding downstream 523644 46404824 ~ 46406931 (-)
AMCG00013908 NA coding downstream 540957 46388154 ~ 46389618 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding downstream 544334 46384682 ~ 46386241 (-)
AMCG00013916 NA coding upstream 23871 46970259 ~ 46976190 (-)
AMCG00013915 NA coding upstream 30303 46976691 ~ 46985670 (-)
AMCG00013920 NA coding upstream 48754 46995142 ~ 47000214 (-)
AMCG00013921 NA coding upstream 68668 47015056 ~ 47017727 (-)
AMCG00013922 NA coding upstream 78463 47024851 ~ 47026381 (-)
G47661 NA non-coding downstream 91811 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 692061 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1007661 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 1075775 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 1102324 45827965 ~ 45828251 (-)
G47718 NA non-coding upstream 111151 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 124955 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 279413 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 549023 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 594175 47540563 ~ 47545591 (-)
G47666 NA other downstream 55205 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 619457 46299161 ~ 46311118 (-)
G47501 NA other downstream 767088 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 847033 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 956264 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 242207 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 918462 47864850 ~ 47868863 (-)
G47896 NA other upstream 1021037 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1419655 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1509515 48455903 ~ 48479577 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_02379628_02392648 NA coding CI01000058 null 2378584 ~ 2392780 (+)