AMCG00013915


Basic Information

Item Value
gene id AMCG00013915
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46976691 ~ 46985670 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013915
agagagagagagagagagagagagagagagagagagagagaggggagaggggagagggaggaagaaaaggagagagaagtttTTGAAGAGAGAAGACTGCTTGCAACTCCATACAGCAAGACAGGTACCAGAAGAAGGGTTCAGGACCATGAGGGCCCGCCTTGGATTATTTCTTCTGTTAAGCCTTCTCCTGATCGCTGCTGTATGGGGACAGGCGCCGAAACCGAGGCCTAGAAAACCAGGAGGCACGAGAAGACCCACCGCAACTCGTCCACAGCCCGTAGAGCCTGCTGAGCCCACAGACTTCCCTCCTCCCATCTTGGGACCCCCTTCCAACATACCCGGCTGCCCCAGGGAATGCTTCTGCCCCCCTTCCTTCCCTAGTGCCCTGTACTGCGACGGCCGCAACCTAAGGAAGATCCCGATCATCCCAGCCTGGGCCCACTACCTGTACCTCCAGAACAACTACATCGATGAGGTGACTGTGGAGTCCTTCAAAAACGCCACTGAGCTCAAATGGGTCAACCTGGACAACAACCGGATACGCAGGGTGGACCGCCAGCTGTTCGATAAGCTGCCCAACTTGCTGTTCCTGTACATGGAGAGGAACAACCTGAAAGAGGTGCCCAATGACCTGCCGCCCAACCTGGAGCAGCTCCGGCTCAGCCGCAACCAGATTTCCAAGATCCCCCCGGGGGTCTTCAACAAGATGGAGCACCTGGTTCTGCTGGACCTGCACCACAACAAGCTGGGCGACAGCGACCTGGGCAAGAACATCTTCAAGGGCCTCAAGAACTTGGTGCAGCTCAACTTGGCCCACAACATCCTGCGCAAGATGCCCCCCAACGTGCCACACAACATCTTCCAGCTGTTCCTGGACCGCAACAACATAGAGGACATTCCCCAGGGCTACTTCAAGGACTTCCACAACCTGGCCTTTGTGAGGTTGAATAACAACCAACTGACCGACAAAGGTGTGCCCAAGACTGTGTTCAACGTCTCCAGCCTCCTGGACCTTCACCTGGCCTACAACAAGCTGAGCAATGTGCCGGTCTTTAACCTGCAGCTGGAGCAACTGTacctgaacaacaacaacattgaaaAGATCAACGGCACAGAGATCTGTCCCTTCCCAGTCATGAGCATGAGCATGAGCATGAACGACGAGGACGCCATGCCCCGGCTGCGCTACCTGAGACTCGACGGGAACGCCCTGAAGCCCCCAATTCCCATGGACCTCATCATGTGCTTCAGACACCTGAAATCGATTGTGATGTAAAGGCTGGACTCTCCGGTTCGCATCTTGCCTTGACAGCACCCACGAATGTCACGGACTTCCGAGGAAATAacatcaacaaagaaaaaattTGAGCAGAATATTCTGCAGTCGTCACAGAAAACAGTCTGCATTCGTTCACGTGCTGATGCCTAgcaatcatatttattaatgtaaaaatcataataattaaaagaatggGGAAAAACCCTGCACAAAACAATACGGACTTCCTGTTCCAGCAGCACCACAAAGGTGTTTCACAAGCATggataaaaaacatgtaaatctttgttatttctttctgtcagtttgtttatagtaataattaaataaccacAATAATACGTGGGATACGCCTAAAAATAAAGGTACGTTAACAGCTGTGTTTTACAATGTAGTTACAGCTCACTAATACAGCTACAACTCCAGTGCTGTAGGGGTTAGAAGAGGAAATCTTTTCACCAGTTTCTGTTCACCAATGGCTTTTCCCCAGGTTAGGGAACTGCATCAGTAATATGTTGTGTAATAAACATGTAACTACCATGTAGTTAAGATGTCATTAATGTACCTGTATTTTAAGGTTatcttgtgtaaaaaaaaaaaggaaaacaaataggTTTATTTACCTTGTTTTATAGAAAGCAgtgttgttctttcttttgctATATAGGAGCTTTAAAAGAGAGACATTTTGGTATCATAGTTATTTATACTTTGGTATACTGCACTATAGTatactgtttctgttttttgtcaCAGTTGGATAAGAGATCCTTCAGCAGGATTCAATCCAGTATTTAATCAGTTCGGAAGAGAATTGGTTGCTTATGAAAGGAGTCTTCAGCGCAAAGTTCACCTGACATCTTTCACAAACCCTTGAACTGTGAGCAAACTCTGCGACTTTGACACAAGCAACTGTTCTGAGAAACTAAAGCACAGTAAGAAGCTAGCATTATGTCTTGTTTTATAgtgcaataacaaacaaaaaagattaaatattttacaaatgcgtgttttctttttatacttCCAAGCGGCGGATCAAATAACAAATGTTCACCACCATGTTGACGATCTTGTCAGTGCCACcgtaattgttttgtttctcgaTGCTCTGTCCGTTCCCCCCCCCCAGAGCTTATATAGTCTTACAGCCTTATGTGAAATCTcagtttatttaacaatttcattttatgtgGAAAATTGCTGTCAAAGAGGTCCAGATGATTGTCCTTCAACCATGAATGGACTGAGAGATTAAGGGAATCCCTTGACTTGAAATGCTACTGGGTTTCCTGGTTTCTGCTCCAATCCGAGTGGTGTAATTATGACAGATTAACACGGCCATTAGGGAGTGCTTGAAGACACCCATAGACTCGATGGATTGGGGCTCACGAGGACCAAGCGGTAAAGACAGCGGTCTTAGTAGAACCTGTCAGGAGTTCTACAATACAGTAATTGTACAATTTGATtcttccattaattaattaacattccATTTCTTGAACAGATCAACTTAATTACTCTGACTCTACAGCTGCATTACAGTTGCACATGAACGGCATTGAAATTCCCATATCTTCTATCTGACGGATTGGACAGTGGTTGGGTTTAGACCAACATACATCTGTGTTGTTTGTGCAATGAGCTGACAGCTTTTTGGTCAGGATCCAAACGGTAGCCTcaccaatacatatttaataaaactgtgtTAACTATTTTCACTGTTTATATTAACTGAGGTGAGACTTTATGTAGATGATTAAATAGTTGCGTTTTttaccattattaaaaaatctaaacattaaACTGGCCAAAGCATGTGCTACAGTTTTTTGACACAAGGATTTCACAATCTCCTGGAGAAAACCAAGTATGTCCATATGTCCAAaccaaatatttttatatactgaACTCAAAAATATTCCAGAGAGTGTTGCTCTGTACAACATCCTCTTTTTGTCAGCCTATGATCGCTTTCACTTGTGTCTGAATATCAGGGAAGGAAGGGCCTGGCTCCTCTGATAACTTCTGTCCTGGCAGAGCAACAGACATCGTTGCAGCTTCTCAAGATGCATCTTGCCACTCTCTTATTCTTGCTCTATCCATCAGGTAAGAATTATAAACATATAGCTGCAGCTGAATTTGAAAATAACACCAGTGACGGTGGGGGCTCActtaatggtttatttcatcCCTGAAACTCTTGCAACTTCCCTgtaatttattacaaattacagtgtGTTGGTACAACCTTAACAAATGCGTGGTTTCATGTCAGTGTtagatgtgtgtatgtctggTTCTGGTAAATATCTAATTTCATCAGAGAACATCAAGGAAACTTTAATCAGATTATacaagaaatgtgaaattaaaaagcaataacagCATGGCACACTGATCTCACAAAAACAGCTCAGCTTCTCAGCCAAGGGAATTTCTTAGATGTTTGGACTGGACGTTTCCGTcacttgtgttgtgttgattCCTTGatagaattatgtttttaatgcagttctATTAAACAGGGAGTTTACGTGAGTTTTGT

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013915 True 3830 mRNA 0.43 3 46976691 46985670

Neighbor

gene id symbol gene type direction distance location
AMCG00013916 NA coding downstream 501 46970259 ~ 46976190 (-)
AMCG00013914 NA coding downstream 30303 46930575 ~ 46946388 (-)
AMCG00013910 srgap2 coding downstream 468974 46470371 ~ 46507717 (-)
AMCG00013906 NA coding downstream 511283 46452064 ~ 46465408 (-)
AMCG00013907 NA coding downstream 569760 46404824 ~ 46406931 (-)
AMCG00013920 NA coding upstream 9472 46995142 ~ 47000214 (-)
AMCG00013921 NA coding upstream 29386 47015056 ~ 47017727 (-)
AMCG00013922 NA coding upstream 39181 47024851 ~ 47026381 (-)
AMCG00013926 NA coding upstream 115909 47101579 ~ 47112942 (-)
AMCG00013925 NA coding upstream 165421 47151091 ~ 47162001 (-)
G47661 NA non-coding downstream 137927 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 738177 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1053777 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 1121891 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 1148440 45827965 ~ 45828251 (-)
G47718 NA non-coding upstream 71869 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 85673 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 240131 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 509741 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 554893 47540563 ~ 47545591 (-)
G47666 NA other downstream 101321 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 665573 46299161 ~ 46311118 (-)
G47501 NA other downstream 813204 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 893149 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 1002380 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 202925 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 879180 47864850 ~ 47868863 (-)
G47896 NA other upstream 981755 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1380373 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1470233 48455903 ~ 48479577 (-)

Expression


Co-expression Network