AMCG00013916


Basic Information

Item Value
gene id AMCG00013916
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46970259 ~ 46976190 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013916
ATGCCAGTTCCAATACAGATGCTGGAACTGGAGAACTTCAACCCAGGATTGGCAGAGAGTGGCTACACGGTGGTGAGAGGCACTGCCGGCACAAACTGCCAGATCTTGTGCAAATGCAAACCGACAGGGCAGAGGAGGCCGGTCATCATTTGGTGCAAGAAGAACGGAGAAGAGCAGTGTGTGACCGTGCTGAGGACGGCCACCAACCTGCGATATGGACGGGTGTCCATGAAGGTCACACAGCACCGAAGCACAGTCGAAGCCTGGGTCAGCATCCAACCCCTCGAGGAGGGAGACGCGGGGGAGTATTGGTGTGGGTTCTGGGAACAGTACCCCGACGTAGAAATCATTGAGGTCAAAGTGAAGATCGGTCTCCAAGTTCGCGCAGCTCCAGGGGCCGCAGGTCAGCTGGCCCCTTCGCCTGCCGCGAACTACTCCACTGAGATCGTCACAGCGTCTGAACACAACAGAGGCGTCAACCTCTGGCACGTCCTCCCGGGGGTGCTGCTCGTAGTCACACTGACTCCCCTGGTTGTGGTGGGGGTTGTTGTCATCAGGAGGATGAGGAACGTGAGGAAAGTGGGTGATGCCCAGCCCCAGGATATAGTCACGGTGTGTAAgTCCCCCGGAGGAGGCGAGGATGGGACCACGGACATAATCTACGCAGTTCTGACACCTCGTCCTCGGGGTCTCTCTGAGGAGCCCAGATATGCCAACATCCAGCCCAGTCGGACCCCCGAACCCTCAGAATACTCGGTGGAATACTCGTCCATCGCGTTCTAGGCTGCTGGAGTGGACATTGACCAGAACCTCATTATTTAAGAACTGCCTGGGGGTACCTAGAAGCTTGTAGGAAAAAAGTGTGTCCCTCAAAACTGCGTTTAGATTATCTGAATCATCTGTGGTAATGGCTTTTCGGACTGATCCATCCCTCTTACCTTGCTAAGGCGGAGGCTGCAGCAGTTTGACAGTGTGCTTTATAAACAGCGCACTTCACAAACACGACTCCAGACACAATAATCATGTTTTCAGTAGAACAAGTGCACCGCAGCTGGCATGCTTCTCACAGGAGTCGTGCTTCTGATGAGGTGTCCTGCCTGCATCCAATGCTGTGCTGAAAGCGACCTCTTGTGGTGTTACACACACATTGCAGGTGATAAGAAGGCAATGCTGTAATCTACTAGCTTTATAGATAAGCATGCACTAGTATAAATAAAGTCAGAGCCAACGTTTGCACGATGAAGTCTCCTGCATTTGTTAGCAAGATGCACTGGGACAAACAGCCATGTTAGGATTGCTTGTTGACATTTGGACAGATTATTAAATTGACAGTTCTTGTGCCaaagttaaatatgtattattaacttctgtagtttattttgctAAGTATCTAGATATTGTTCTGTACACGAGACATCTCTGGTGTTTCTTTTAACAGAGGGCAGCAGGTATGCATACAGTAGTAGTCAATTTCCTGCTATAAGGTTAAGTAATTCCCCTGCAGGTTATCAAGACCATTATCTTGGCTGCTATGCAAATTGTCTGAAGTGTTCGCCTTGCTGACTCACTAAGCAGTACATCAATAAACTCTGGTGACTTAAACTGTGTGTGGAAAGGGAATGCCGTGCAGTGAGCAAATATTTGAACAGGCCTTCCACTGTCTGCTGGTAAAGAAACACCTGACTGTCATGATGTCATGCTGTAGAAGGGGCTCTTCTGCCACCTGTCAGAAACGAGGGAGCGATTAAAAGCACAGCACTGCTCTCCTGTGAAGCAGCACACTGACGCAGGCATGTAATGACCATGAGAGGcatgaaaaagacaacaaatgaTTAGTGAGTCATGATCTGTAGcag

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013916 True 1856 mRNA 0.50 5 46970259 46976190

Neighbor

gene id symbol gene type direction distance location
AMCG00013914 NA coding downstream 23871 46930575 ~ 46946388 (-)
AMCG00013910 srgap2 coding downstream 462542 46470371 ~ 46507717 (-)
AMCG00013906 NA coding downstream 504851 46452064 ~ 46465408 (-)
AMCG00013907 NA coding downstream 563328 46404824 ~ 46406931 (-)
AMCG00013908 NA coding downstream 580641 46388154 ~ 46389618 (-)
AMCG00013915 NA coding upstream 501 46976691 ~ 46985670 (-)
AMCG00013920 NA coding upstream 18952 46995142 ~ 47000214 (-)
AMCG00013921 NA coding upstream 38866 47015056 ~ 47017727 (-)
AMCG00013922 NA coding upstream 48661 47024851 ~ 47026381 (-)
AMCG00013926 NA coding upstream 125389 47101579 ~ 47112942 (-)
G47661 NA non-coding downstream 131495 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 731745 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1047345 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 1115459 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 1142008 45827965 ~ 45828251 (-)
G47718 NA non-coding upstream 81349 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 95153 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 249611 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 519221 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 564373 47540563 ~ 47545591 (-)
G47666 NA other downstream 94889 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 659141 46299161 ~ 46311118 (-)
G47501 NA other downstream 806772 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 886717 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 995948 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 212405 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 888660 47864850 ~ 47868863 (-)
G47896 NA other upstream 991235 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1389853 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1479713 48455903 ~ 48479577 (-)

Expression


Co-expression Network