AMCG00013917


Basic Information

Item Value
gene id AMCG00013917
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47077860 ~ 47085038 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013917
acagaaaacctaATTTCCATCCCCTACACGCACAGGAGAGTTTGCAAGAGCAGGCTACGTGCACGGTGCGTGTGCGGGCCTGTGCGGTCATTTCCCGACCCTCCCTGAGTGGACGCGCCGCGACGCCCCGTCACGCTTGGCTCTTTGTCGACGGCCCCTTAACCGTCTGATGAAATCCCCTTACCGACGGCGGCGAGGGGAGCAGAGAGCCGGAGAAAAGCGCCGGAGCCGCCAGACACCCGCACCGCCACCGAAACGGGTTTATTCTGTGCAACTGCTGCGTGGCTGCGCCAGTGATTAGCCCACGACTGCCACTGCAATAAACGGCGATTTGATGCATTTGCCGCGCCGCTTTTTGGAGGGGGGTTATTACCGGTTGTGCAAGAACTTGCAAAGCTGCACTTCAGCCGCGGCGCACTGACTGCACAACATGGCTGTCCTCTCCGCCTGCGCCCGGGATTGCGGCTCCTTTCTCCGGTGCTCTTCCTCCCCGTGCTCCCCCGTCTCCCCCAAGCTGGCCGCCCGGATGAAGCTCGCCCCAGCCCCGGTGAACGACAGGAACAGCGTGCGCAGTGCCGAGTGTGCCACCGTGGAGGTCGGAGCGCGTTGGGAGCACAGAGGCCGGTGCGTCACTCACAGAAACTCCTAAACATGGACTTCATCGAGCGGACCGAGACGGGACCGGCGTCGGGAATGTGCAGCACATAAAGACTTTCTCCGCGGATGGACTCGGCGTGCAGCCGTCACTGGCGGGAGGTGTGCAGAGTGACAGCTGTCTGGTCGCAAaaggggatttatttatttttatttaaagaatgcaATGCATAAGTCGATccttatgtgtatatttttatttttgcacaccAGAGCCTAGTTAATTGACACCTTGTCTtggagtattattatttttccttattttaaaagGCACTTGCAAcagaaatctattttttaaataattatatatttataatggaCTTTGGGGGGAGGGCGTGAGTCACCATGTTCAGAGCCATGAGTTCAGACGGACTGTGCTCCAAGGAGAGCGGCTCCTCCACCGCGGGCTCGGCCGCTCTCGGGGTGGCCTCTCTCCGGCCGGGCAGTCAGGAGAGTTCGTGGATTGGCCTGCTCTCCGTGGTCTCTAGGCCCGCCCTGTCCTTCGTGCAGAGATATATGCCGGCTCGGCCCAAAGCGGCGGTGCCGACGGACACTGCTTCCGAATGGATCACCGGGGATCTGAAGCAGAGCCTCGAGGGGGAAAACGCGTTTTTGGACCGGTTGGAGGAGCTGATGCCTCAGACGGACCGACCCCCAACTCTCGCCTACCTGCACTACCAGCACGGGGCCGCTTCGCCGGGGTGTCTCGGCTGGCTCAGCGCGGACTCTCTCCGGGAGCTGGGGATACAGAGCCCCGCCGACGGGGCCCCGAACCCGAAAGAGCACGGCTCGGGGGCGGGGTACATGGCCACGGCCCGGAACTACGTCACGCAGGTGTGGATGAACGTGATCTCGGGGCCGGAGAGCCGGGGACACGGGCCTGGACTGGGCCCGGACGGCTGGGCCTCGGGGGGCTCGGTGGCGGCGCAGGGGAAGAGAAactggtggtgggggggtgtttgGGGCTCCGACCAGCAGGGCTCCCAGGGCTGGCTGTCCCTGTTCACGGGGAGGCCCGGTGAGGGCAGGGGGCCGGGCCAGCAGCAAGAATGGAGTCCAGCCGCTGTCGTTGTCAAGCCAGGGGGACTGTTAGTACAGGGTGACAGGGGGGGTCCTGTGAACAGCGAAAGCGCTGGACCTCCCTGTATCAAAGGGCAGGCGGACAATGGCTCTCGCACGGCCTTGCCAGAATCTGTGCCCCCTGCGCAAAAGCCACTGCTGCAGTTTCAGCCCCCCGGTGCCCATGCTGTCACCGCTGGCGCCGCCACCTACAGTGAGGTGGCTGTTCTCACCCCGGACCAGGACAATGGCTATTCCAGTTTGGAGGAGGAACAGTTTAGCTCCAAACTGTGCCCTATGGAGGCTTTGGGTTCTGGGCAGGCATGTGTAGAAGAGGGGGACAGCGGGAAGAGAGAGGAGCCCGGCTACGACTGTCCCCCCTTGGATGAGCAGCCGAGTGAGACTGTGATGGAGAGCAGTGTGGGAAGAGAGTGGGTGGAGGTAGAGGCGGGGGACGTGGAGGCCACAGAGGCGGCCTCGGCCTCCGAGTCTTCCGACGAGGACGAGGAGGCCGAGCTGGAGGTCCAAGCGGCCGCCCGGTCTCCCCCCTGCCTGGTGAAGCCAAGCTGCCAGAACAAGGCCATCGCCTACATCCTGGGCAGCCCCTGCAGCGAGGACGAGGAGTCGGACTGGGAGCAGGAGCAGTGCTGGGACAGCGATGACGGCTTCGACAGCGAGGGCTCCTCCGAGATTTCCAATTCAGAgtctgaggaggaggaagaagaagaagaagaggaggaggagcaagaagaagaggaggaagaggcagACACTGAATTGGAAAGCCTGTGGAACTCTTTCTGTCAAAGCAGCGACCCATATGACCCCCGCAACTTCATGGCCGCCATCCAGACTGCGGCCGCCAGACCCTGCGCCGCTGCACCGTCGAGCCCAGGTGAGGACGACTCGTGGCAGGAGGAGGACGGACCGGCTCTTGGGGGTCACGAGTGTCCAGGGTCACCCAGCCCTCCCCACcgctccccctcttcctcccccaGGCCCCTGATGCTCGAGTGCGACTCCTCGGACGAGGCCAGCAGCGCCGACGAGGCCGAGAGTCTGCGGCTGTGGAACTCGTTCGCCTGCAGCGTGGACCCCTACAGCCCCCTCAACTTTAAGGCTCCACTCAGGACTAGAAAGCCAGGCAAGAGCCGGGGGAGGGGCCCCAACAGGCGGCCAGCTGCCACCCCCTcttcccagcagcagcagcagcagcaggaggaggaggtgaggaAGGCAAGGGAGTGCCTGGACAGCGGCTTCACCAAGGGCTTCGGCACCCAAGAGTGGAGCGGCGCACGGTGTGCCAAGCTGAAAAAGGTGCGCTTCGCCGAGGAGGTGGAGGAGTTCTACACCAGCTGCGATGAAGATCGCCGAGGCCCCTGGGAGGAGTTCGCCCGTGACCGCTGCCGCTTTCTGCGCCGCGTGCAGGAGACCGAGGACGCCATCAGCTACTGCCTCACGCCCGCCTTCCGCCTCGCGGTCCTTTCCAAACTGCGGGAGACGTGTTGAGGGGTTTCTTCCGTGtattttctcctcttcctccaaaGGAACCGTGAATAAAGACATGTAGTATAAATGAAAGGACAGTGACTCGGTCCTTTGTCTTCAGGGGGATGGGGATGGACGGGGTGGGTCCTAAAGGTATTCAGAGTCGTAGGCCAAGGAAACCGGGCCCTGAACCCAAACCCCCCTGTGTCCTGGTTCGCTCCGGTGCGTCCCGTCTATTCAGTGTTCAGTTGAGCTGTGGTGACTGAAGTGACTTGCCAGTTGTTCGCAACCCTGTCTGGTTCATTCAGCCAATCCCCTATTCTGTATCCTGCTGCCCTCACTGTgtgctttgttattttatgttttatctcCCCCGGTGTTTGGGTGCGGTATGTGATCTCTCCGCTACATACAGACGCATCCAGCTTCCCGTTTGTTCTCTGTTGCTCTTTGCCCTCCTCCACTGTTTTTAACGGCCCAGATGGaggaaaataatacatgcaGGCTGCCTCatcagtttttattaatattttctttttttacctttAACCAACTGCAGGTTCATTAAATAAACCCAGGAGCACTCGCGATCGGGAGGAGAAACTGCTCGGTTAAGCCATTTAATTTGCTGCTGGATTAGTTGGAAGCCTGATTGGGGAATACATGCGTTTTCTCCCTGGGCCGCTGCGCCGTCCTCAGGCAGGGCTTTGGATTAACTTAAAGTAGGTCTCCCTTGTTCTGTCCCTCTCTCGGTCTGGATATTGCAGCCCTTCCCTCATTTGAGATTCCACGAAACAAAGAGAACGAgcagctctctccctctctctgaacTCATCTCCGGCTTGTTCGAGCAGAAGGGTATTTGGTCTGATTGAGCCTCTGATTATTAATATATCCCATTCTTTGGTGTCTGACAATCTCTGTGAGAttcattatgaataaaatattggcATTTGTGCATTGGTTGAGGTGAGGGAATGTAGGATAGAGCtggggaataaataataaaaaagtgatgTATAATTATTCAGTTTGACTTCTAAAAATGTGATTTCCCCCAATATCATTTTCACTTCATGGTGAAATCTACttgtttcatttaaaagttTTGCGGTAGAACCACTAAATCCCCAACAATCCCAGCCTGAGTTTTCTTCCACGGGCCGATTGAAGTATTTATTGATCTCCTCCCACCAAGTGCAGGCGTGCCAACCCCAGACTCCTGCAGCTGAAGGTTGTAATAACTTAAGTGTCAATTCCCCCGAAAGCAACCATCTAAATAaccaaatatgtaaataaaggaTGCTCCTGTCCCCATTGCCCAGCAGTATTTGGGGGGTGAAATGCCCAATGACATATTCATCTTATTCAGTGTTAAATTAAAGAGTCCCAGATGATGGCAAAGCAACCCGGACGGCAGGCACagtttctctccccctctgcaGTGCCTGAGAGGTTTGTGTTGTCAGTGGAGTTGGTGGACAATTTAGTGTTCATCAGTTTTCAGTCATTACTCTCCCAGAACAACAGGGGGTGCCATCTGATTGGATGTGTGGTGAAGCCTGCAGTTTGTGCTCGAGAGACTCTTGTGcttatttcaaattattgtgtttttttgtttgatttccccCGCCCATAGCTGTCctagaaatgtgtttgtgtccCCCACGTTTTGTTTGTTCGGCAGTGTTTCAGAAACTTGCGTTGGACAGTTGTTTGATTTTGTGATGCAGTGGGGAAGGGCGACTCTTCAATAATGGGTATAatgccaattaaaacaaattaaaactatacatacaactaaattatattaaatttttatttttgtaacacttCTGGCATCTGCATCAAAAATCAATTGTTgcaaatttttttttgtattttttttttctctctcctttaggatcaaaatatattaaatatttagtaaatcgaaatactaataaaaaacg

Function

GO: NA

KEGG:

id description
K17558 PPP1R15B, CREP; protein phosphatase 1 regulatory subunit 15B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013917 True 5156 mRNA 0.55 2 47077860 47085038

Neighbor

gene id symbol gene type direction distance location
AMCG00013923 NA coding upstream 50886 47026485 ~ 47026974 (+)
AMCG00013918 NA coding upstream 65598 47010292 ~ 47012262 (+)
AMCG00013912 LOC106565692 coding upstream 207147 46858640 ~ 46870713 (+)
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding upstream 240850 46796042 ~ 46837010 (+)
AMCG00013913 NA coding upstream 325203 46743981 ~ 46752657 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding downstream 38670 47123708 ~ 47132176 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 456195 47541233 ~ 47543434 (+)
AMCG00013941 LOC106566646,LOC106571888 coding downstream 639396 47724434 ~ 47730274 (+)
AMCG00013953 NA coding downstream 1000921 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 1014638 48099676 ~ 48143917 (+)
G47684 NA non-coding upstream 101674 46975516 ~ 46976186 (+)
G47681 NA non-coding upstream 106322 46969738 ~ 46971538 (+)
G47669 NA non-coding upstream 143083 46930467 ~ 46934777 (+)
G47580 NA non-coding upstream 607389 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 774991 46296633 ~ 46302869 (+)
G47728 NA non-coding downstream 62317 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 147016 47232054 ~ 47248989 (+)
G47767 NA non-coding downstream 171459 47256497 ~ 47258758 (+)
G47791 NA non-coding downstream 321578 47406616 ~ 47407552 (+)
G47797 NA non-coding downstream 335978 47421016 ~ 47421229 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 4152 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 1118666 45943571 ~ 45959194 (+)
G47398 NA other upstream 1135954 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1254632 45816372 ~ 45823228 (+)
G47206 NA other upstream 1716978 45326658 ~ 45360882 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 134881 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 667176 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1154662 48239700 ~ 48258433 (+)
G48018 NA other downstream 1183716 48268754 ~ 48269272 (+)
G48026 NA other downstream 1196025 48281063 ~ 48351285 (+)

Expression


Co-expression Network