AMCG00013920



Basic Information


Item Value
gene id AMCG00013920
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46995142 ~ 47000214 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00013920
CAGCAAATGTCTACCAAATGCTGAATCGGGAACAGACGAGCGATCGCTGTAGAATccaaaaaagaaggaaaaaaggaaagtcGAGCTCATCAGTAGTCTGGGGCCCTGGCCATGTGGGGATGTGGAATGTCTCGTCCTCAGGGTAAACACGGGCAGGGTCCCGGCACACAGACCCGCAGTGCAACGCCAACGGCTCGCTGGGAAGAAgctaaataattgaatacaagAGATACCTTTAAAACAGTCTATCTTTTGTTTCCACAGCAACAAAGGGAGTAAGACGAGATAGTGCCTCCTCGTGGACGTGGGAGACCTGATGGATCTGAGGAGCTTGGTGCTGTGCCTCTGTGTGCTGGGCGCGGACCAGTCTCCGGCCACCTTCATGGACTACGACTATGGAGGGGTGCCCATCACGATCAACCGGATGTTGGGGGAGCCCAGCGTGATGTCACTCAGGGGCCGCATTGATGCCGGCTGGCTCCGTACAGTCAACCCCCAGAGCTGCCCCCTGGAGTGCGAATGCCCCATACAGTGGCCCTCGGCCCTGTACTGTGACAACAGGGGCCTGAGATACGTGCCACCCACTCTGCCCCCACGGACTGAGTACCTCTTCCTGCAGGGGAATCGCATCTCTGGCCTCCCAGCTGGCGTCTTTAGCAACACCAGCCTGGTGCGCTGGCTGTTCCTGGATCACAACCAGCTGGCGAGCGACCAGGTGGCCAGTATGACCTTGGCACAGCTGCCCCGGCTCAAGAACCTCTTCCTCAATCACAACAACCTGACAGATATCCCCTCTCGGCTGCCCGGGGGCCTGAAGCAACTCCGACTGGCCCACAACAAGATCGCAAAGATCTCCCCTGAGGCGTTCGGGAACCTGCATAACCTCACCGTGCTGCTTCTGCATGGAAACCAGCTGAAGACCATCGGGGAGGCCGACTTCAAGGGTCTGCACTCCATCATCCTACTCGACCTCAGTCACAACCATCTCGAGGAATTCCCCAAGAACCTCCCGCCGTCCGTCAGACAGCTGTACGTCTCCAACAACTCCCTCAGTGCCCTCCCCGCGGGGTGCCTGGCGGGCTTCGACAGTCTTGAGTACCTCAGGATCAGCCACAACGGTCTCCAGGACAAGGGCATCGCTGAGGGTGTCTTCAACGTGTCCTCCATCGTTGAGCTGGACCTCTCCTACAACCAGCTCACATCCATCCCCCTCGTCCCAGAGAGCCTACAGTACCTGTATCTGGAGGCTAATCTCATCCAGGAGTTCAACGTGACCAGTTTCTGCAGGAGCGTGAGCCCGCTCCGTTTCTCCCGGATGAGGATTCTCCGACTGGATGGCAACAGGCTCTCGTACCATCAGCTGCCCCCCAACTGGGTACAGTGCCTCAGGGTGCTCAGAGCCATCTACGTCTGAACGACATCCCCTCTCACCTGCCCCTGCTGGTCACCAATGGGCTCTGACATGCCAGGATGAACtttaatatattgtgtgtttttttaattctacaaGATTTGCATAAAGCGAAAGCATGCAGCGTACAAGTGTAAGGTTACAAATTTGTAAATGCAGTATGCAAGCAAAGCCTTTTGCAGCcttgtggttttgtttcagaGAAAATATTCT

Function


GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00013920 True 1624 mRNA 0.56 4 46995142 47000214

Neighbor


gene id symbol gene type direction distance location
AMCG00013915 NA coding downstream 9472 46976691 ~ 46985670 (-)
AMCG00013916 NA coding downstream 18952 46970259 ~ 46976190 (-)
AMCG00013914 NA coding downstream 48754 46930575 ~ 46946388 (-)
AMCG00013910 srgap2 coding downstream 487425 46470371 ~ 46507717 (-)
AMCG00013906 NA coding downstream 529734 46452064 ~ 46465408 (-)
AMCG00013921 NA coding upstream 14842 47015056 ~ 47017727 (-)
AMCG00013922 NA coding upstream 24637 47024851 ~ 47026381 (-)
AMCG00013926 NA coding upstream 101365 47101579 ~ 47112942 (-)
AMCG00013925 NA coding upstream 150877 47151091 ~ 47162001 (-)
AMCG00013929 NA coding upstream 201041 47201255 ~ 47212425 (-)
G47661 NA non-coding downstream 156378 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 756628 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1072228 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 1140342 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 1166891 45827965 ~ 45828251 (-)
G47718 NA non-coding upstream 57325 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 71129 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 225587 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 495197 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 540349 47540563 ~ 47545591 (-)
G47666 NA other downstream 119772 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 684024 46299161 ~ 46311118 (-)
G47501 NA other downstream 831655 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 911600 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 1020831 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 188381 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 864636 47864850 ~ 47868863 (-)
G47896 NA other upstream 967211 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1365829 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1455689 48455903 ~ 48479577 (-)

Expression



Co-expression Network