AMCG00013925


Basic Information

Item Value
gene id AMCG00013925
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47151091 ~ 47162001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013925
ATGTGTGACCCTGGCCCCCTTCCCCTGTGTCTCCATGGTACCCGGGATGTGATGATGGTTGGCGTTGGAGTGAAgtgtgaggaagaggaggagagccGGGCCCTGAGCCGGGAGCCCAAGTGCGCCTCGCCCTGCGATTGGACCGCTCCTCCACCCGCCGCGCGCATGGACCACAGCCCAGCCGGAACGCCCCGCAACACGCACACCCCCTCGGAGGGCTCGCCTAGCAGGGAGAGGACGCACCGCCGCAGCCCCCTTGTCCAGGACGGCGGACACAGGGGCCACGAGAGGCTGGAGCTGCACCGCAACATCAGTGAGGTGATGCCCACCATCGAGAAGCTGTTGAGCGCAGACTGGAGAGAGAAGCTGCTGGGGAAAGGCTGCGTGTCGAGCAGTGCCGACCTGAAAGGAACCCCCGAGAGCCTGGCGGAGAAGGAGCTGCAGCTGTTAGTGATGATAAACCAGCTGTCCAGCCTGAGGGAGCAGCTCCTGAGCGCCCACTCCGAGCAGAGGAATATGGCCGCCCTGCTCTTcgagaagcagcagcagcagatggAGCTGGccaggcagcagcaggagcagATTGCcaagcagcaacagcagctgattcaacagcaacacaaaatcAACCTCCTCCAGCAGCAGATTCAGGTGAATATGCCCTACGTGATGATCCCTGCATTCCCTCACAGCACACAGTCGCTTCCTGTGGCCTCCGACCCTCAGATGAGGCTGCCGATTCAGCCCATTCCCTGCAAACCAGTGGACTATCCCATGCAGCTGCTGAGTAGCCCACACTCCACCCCCGTGAAACGGCCCAGTGGACCGGTCCACCTGCAGGAGGCCTCCCAGCCCCTGAACCTCACCTCCAAGCCCAAGGCCCCAGAGAGAGGGAAGACCCCCAGCCCCCAGGCCCCGGAGGGCGCTCCCCCCGGACACCTGCCACCTGGCTATGGCACCCCCATGGACCTGCAGCACAGCCCCCCCCAGCCGGGGCTCAGTCTGGGGTTCCTGGGCGAGGGCGACGTGGTGACGCAGGCCATCCACGACGCGCGGCAGCTGCTGCGGAGCCACGGGGCCGGCGGGAGGAACCAGGAGCGAGAGCGGGACTGGGACAGAGAAGGGAACGCCCACAGGAAGgaGAGTCACCTGCACCAGGAGAAGGGAGAGGAGGGCCAGCTGGCCCCCCAGACGGCCGAGGAGCCGCACAGCAGCGACTCGGAGGGACCTCCTTCTGCCAGCGGTTCTGGCGGGTTCCCTGAGGGCCGGGTGGGGTCTGCCGGGCACATCAAGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGGATGAGCGCCGGCGCATCCTGCAGGCCTTCCCCGACATGCACAACTCCAGCATCAGCAAGATCCTGGGCTCGCGCTGGAAGGCCATGTCCAACCAGGAGAAGCAGCCGTACTACGAGGAGCAGGCGCGGCTCAGCCGGCAGCACCTGGAGCGCTACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCATCGTGGAGGGCCGGCGTCTGCGCGTGGGCGACCAATCGGAGCAGCAGCTGCACCACTATTCTCCAGCGGAGCCCCGGTACCCCAGCCCCCCGGTCTCCATGACCGCCCTGCCCCTGCACCCCGCCCTGCTGGAGAGATACCTGCCCCGCGCCCTGGAGCCCCACACCTCCCAGCCCAAAGAGGGAGACAGTGGGCCGCCCCCGCCGCCCCCGGCAGAGAGACTTCCCTATAGCGAGGGCGAGGACAGCGACCCGGGGGACCGCAGCGAGGGAGAGCTGGTAGTACTCACCGACTGAGAgtaggtcagaggtcagaggtcagaggtcaaggtGGCGGAAGGAGGACCCCCTGGGGTGGGCATCGCCTCATGCCACGTCTCCAAAGGACAAGACTGAGCAtcggttttaattttgtttgtgtttgtttctttgtttctgtttttaaatcctgAACCCCATGCTGTCACACTAGTATTGGGTGAGCtattacatttagaaatatatgtatataataggTCAACAGAAACCTGCACTTAATACAAATTCTTTAGCATCAATTTTGTGTTTCCTGggaggttttttattttaattgtattaatttttccCCCCCCgagtgtgttttaaaaccaaaccaaaaaacccAACATAGTTCAGTTTATCTAAGTTGGGCTTCCACTGCCCATCGTTGCTCTGTGTGGGGTCTTCCCTCTCACTCTGAAAAGTGTAGCGGGTGTCGGCGAGAGTCCCGGTCGCCGTGTGGTCACCCGTGACCGGTGCTTTCCAGACTCCTTCGTAACAGGAAGTGGTTCAGCCAGACCCAGACAGAAAGCACTTTGTCTAAGCAGC

Function

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013925 True 2367 mRNA 0.62 13 47151091 47162001

Neighbor

gene id symbol gene type direction distance location
AMCG00013926 NA coding downstream 38149 47101579 ~ 47112942 (-)
AMCG00013922 NA coding downstream 124710 47024851 ~ 47026381 (-)
AMCG00013921 NA coding downstream 133364 47015056 ~ 47017727 (-)
AMCG00013920 NA coding downstream 150877 46995142 ~ 47000214 (-)
AMCG00013915 NA coding downstream 165421 46976691 ~ 46985670 (-)
AMCG00013929 NA coding upstream 39254 47201255 ~ 47212425 (-)
AMCG00013928 NA coding upstream 51598 47213599 ~ 47217346 (-)
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding upstream 68558 47230559 ~ 47240804 (-)
AMCG00013931 NA coding upstream 82381 47244382 ~ 47274829 (-)
AMCG00013933 NA coding upstream 113670 47275671 ~ 47290041 (-)
G47718 NA non-coding downstream 30490 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 76063 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 312327 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 912577 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1228177 45921106 ~ 45922914 (-)
G47766 NA non-coding upstream 63800 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 333410 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 378562 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 527844 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 854560 48016561 ~ 48016838 (-)
G47666 NA other downstream 275721 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 839973 46299161 ~ 46311118 (-)
G47501 NA other downstream 987604 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1067549 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 1176780 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 26594 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 702849 47864850 ~ 47868863 (-)
G47896 NA other upstream 805424 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1204042 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1293902 48455903 ~ 48479577 (-)

Expression


Co-expression Network