AMCG00013927 (LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786)


Basic Information

Item Value
gene id AMCG00013927
gene name LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47219919 ~ 47227969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013927
ATGACGAAGCTAACTGTCTTAGCAGGTCTGTTCCTGGTGCTGGTCCAGCTAGCTGCAGTGGCTGCTGGGAAAGACAACATTGACAATGGCTATGAGATTGCTGAGATCGCCAAgTACCTGGACTTCATCAGTGTGATGACCTACGACTTCCACGGAGCCTGGGAATCCTTCACTGGACACAACAGCCCCCTGTACCGCGGCTCCAAAGACAAAGGGGATCTCATCTACTTCAATATTGACTTTGCGATGAAGTACTGGCGGGATCAGGGCGCCCCTGCGGAGAAGCTTCTGTTGGGATTCCCCACATACGGGCGCACATTCCGCCTCACGTCCAATGACACCGGGGTGGGGGCTCCTGCCAACGGCGCTGCTTCAGCTGGCCCGTACACCCGGGAGGCTGGGTTCTGGTCTTACTACGAGATCTGCACTTTTAAACAAGGTGTCTCCATTAACTGGATTCAGGACCAGAAGGTGCCCTACGTCTCAAAGGGCAATGAGTGGGTGGGCTTCGACAACAAGGAGAGCTACGAGACCAAGGTACCCCCCGCCACAGTGCTGAAACTAAAGTAA
>TU59597
AGAAGCTGCAAGTCTTGATCTTTACTCACGTGTGCCGATTATTATTGTCTATAATCAGTCGCAGTGCCTTCACTACTGCTCGGACCCCTACACAATGGACTCTACCAACCCTCATGTTAGACTGTACCACTTCAGAAATCTGGGAGAAGGTGTTATGCACCGTTTTGTTAAAAGTACATTAACCTGAAAAGGCGTCTCACTGCTGTTCTGAGCTGAGAAAACACCAAGACACAGGGAGGGGAAAACTGCAAGCCAGAAGACAATGACGAAGCTAACTGTCTTAGCAGGTCTGTTCCTGGTGCTGGTCCAGCTAGGTAAGTTTTGAATGC

Function

NR:

description
PREDICTED: acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013927 True 570 mRNA 0.55 6 47222081 47227969
TU59597 False 329 lncRNA 0.46 3 47219919 47224080

Neighbor

gene id symbol gene type direction distance location
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 87743 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 134881 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 192945 47026485 ~ 47026974 (+)
AMCG00013918 NA coding upstream 207657 47010292 ~ 47012262 (+)
AMCG00013912 LOC106565692 coding upstream 349206 46858640 ~ 46870713 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 313264 47541233 ~ 47543434 (+)
AMCG00013941 LOC106566646,LOC106571888 coding downstream 496465 47724434 ~ 47730274 (+)
AMCG00013953 NA coding downstream 857990 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 871707 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 917429 48145398 ~ 48158245 (+)
G47728 NA non-coding upstream 63215 47147355 ~ 47156704 (+)
G47684 NA non-coding upstream 243733 46975516 ~ 46976186 (+)
G47681 NA non-coding upstream 248381 46969738 ~ 46971538 (+)
G47669 NA non-coding upstream 285142 46930467 ~ 46934777 (+)
G47580 NA non-coding upstream 749448 46419132 ~ 46470471 (+)
G47762 NA non-coding downstream 4085 47232054 ~ 47248989 (+)
G47767 NA non-coding downstream 28528 47256497 ~ 47258758 (+)
G47791 NA non-coding downstream 178647 47406616 ~ 47407552 (+)
G47797 NA non-coding downstream 193047 47421016 ~ 47421229 (+)
G47804 NA non-coding downstream 317223 47545192 ~ 47545591 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 146211 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 1260725 45943571 ~ 45959194 (+)
G47398 NA other upstream 1278013 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1396691 45816372 ~ 45823228 (+)
G47206 NA other upstream 1859037 45326658 ~ 45360882 (+)
AMCG00013943 NA other downstream 524245 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1011731 48239700 ~ 48258433 (+)
G48018 NA other downstream 1040785 48268754 ~ 48269272 (+)
G48026 NA other downstream 1053094 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 1305917 48533886 ~ 48546200 (+)

Expression


Co-expression Network