AMCG00013933


Basic Information

Item Value
gene id AMCG00013933
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47275671 ~ 47290041 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013933
TTCCAGCCTTCTGTTCCCTGATGGGCTGACGGAGGAGAAGGTGAATCTGGGCTGCCGTGCTAGGGCAAGCCCACCCGCCACCTACAGGTGGAAAGTGAACGGCACCGATGTGCGAGTGGAGGATGAGCCGCGCTACACCCTGGTGGCCGGGAACCTGGTCATCAGCGCCCCCCAGCGTGGCCAGGACAGCGGCTCCTACCAGTGCCTCGCCACCAACCCCAGCGGCACGATCATCAGCCAGGAGGCCAGCGTGCGGTTCGGCTATCTCCGTGAGTTTCCCCCTGACGAACGGAGCCCCCAAACTGTCTATGAAGGAGCAGGCACTGTCATCCCCTGTCAGCCACCCCCACACTACCCAGCTCTGTCCTACCGGTGGTTTGTCAATGAGTTCCCCACCTTCGTGCAGCCAGACAGAGGCCGCTGGTTCGTCTCTCAGGTGACGGGGAACCTGTATCTGGCCAAGGCCGAGCCCAACGACACTGGGAACTACTTCTGCTTTGGCACCAACAGCATGGAATTCACCACAAAGAGTGTCTTCAGCAAACCCAACCAGCTCACCGTGCAGCCTGACGCTTCCCCCAGAAAGTCTGCCCCGAACATCAAAGTGCGCTTCCCATCTGACACCTACGCACTGACTGGGCGCAGCGTGCAGCTCGAGTGCTTCGCATACGGCAACCCTGTTCCGAAGTTGCGGTGGCGGAAGGTAGACGGATCCCTGCCCTCCAAGGTGGTGACCAGTGCGGAGGGGTCAGTGCTGCTGGTGCCCGAGCTGGGGTTTGAGGATGAGGGCATGTATGAGTGCGAGGCCCGTAACTCGGAGGGCCGGGACACCTTCCAGGGACGCATCACGGTGCAAGCCCAGCCCGAGTGGTTGGAGATGATTAGTGACTCAGAGAAGGAGATCAGCTCAGAGCTGCGCTGGCGGTGTGTCGCTGGGGGAAAGCCACGGCCCTCCATCCGCTGGCTCCGCAATGGACAGCTGCTCGCCTCCCAGCAGGATCGAATCGAGGTCAATAACGGACAGCTGAAGATCTCCAGCCTGGCCCTGGAGGATTCTGGCATGTATCAGTGCGTGGCAGAGAACAAACATGGCACCATTTACTCCAATGCAGAGCTGAAAGTACAAGTCCAGGCACCGGATTTCCGACTTAACCCGGTTCGCCGGCTGATACCGGCCGCTCGGGGGGGCCAGGTGATGATGAAGTGCCGCCCCCGGGCCGCACCCAAACCCACCCTGTTCTGGAGCCGAGGGACGGAGCTCCTGTCCAACAGCAGCCGGGTGACAATCTATGCAGATGGTACGCTCTGGATTCAGAATATCAGCCGTGCGGACGAGGGGAAGTACACCTGCTTCGCTGAGAACTTCCTGGGAAAAGCCAACAGCACGGGGATCCTGTCTGTCCGGGATGCCACAAAGATCACTCTGGTGCCGTCCAACGCTGACATCAACCAGGGAGAGAACATCACGCTGCAGTGCCATGCGTCGCACGACCCCACCATGGACCTCACCTTCACCTGGTCTCTGAACGGGGTGTTGCTGGACACGGAGCAAGACAGCGGACACTTCCATCGCCTGGAGGGGAAAGAGACGGTGGGGGACCTCACCATCGTGAATGGCCAGCTGGGGCATGCGGGGACATACATGTGTACGGCGCAGACTGTGGTGGACAGTGCCTCCGCCTCCGCCAAGCTGGTGGTCAGAGGTCCTCCTGGGCCACCAGGGGGCGTGGTGGTGAAGGGGATTAACGAGTCTGCGGTGGAGCTGAGATGGAGCCGGGGCTACGACAACCACAGCCCCATCGGGAAGTACAGCATCATGGGTCGCACTCGCCTCGCCGACACCTGGAAGCCGATGCGAACAGGTCCGGCCAACATCGAGGGCAATGCAGAGTCTGCCCATGTGATCGGGCTCCTGCCCTGGATGGACTACGAGTTCCGGGTCATCGCCAGCAACATCCTGGGCAGCGGGGAGCCCAGCATGGCATCACAGAGTGTCCGGACCAGGCAGGCAGCCCCCACAGTCGCCCCCAGTGGACTCGGAGGAGGAGGCGGCGACCGGCACGAGCTTATCATCACCTGGACTCCCATGGCGCGGGAATACCAAAATGGCGAGGGATTCGGCTACATCCTGGCCTTCCGGAATAGGGCGGCGCCAAACTGGGAGTTCTTCACGGTGCCCAACGCGGAGTCATCGCGCTTCGTGTACCAGAACGACAGCCTGTCCGCCTACTGCCCCTTCGAGGTCAAGATCAAGGCCTACAACAGCAAAGGAGAGGGCCCCTACAGCCAGATCGCGCTGGTGCACTCCGCAGAGGAAGAGATCAGGGCTTGtctcacccacccctcctcctcctcagagcCTACCGTGACCCCTCGTCGAGTCAATGCTACCAGCCAGTCCGCCTTCGAGATCCTGGTTTCCTGGGACCCAGTGCAGCACCTGTCCACCAATGGCGTCCTGCAAGGATATGAGATCCGGTACTGGCGCCAGAATGAGAAGGCGGCAGCGGCGGATAGGGTGCGGACGGCGGGGTTGGAGTCGACGGCGAGGGTGTCCGGGCTGCGGCCCAGTACTCTGTACTACGTCACCGTCTTGGCATACAACAGCGCGGGCACGGGCCCCCCCAGTGCTCCCACCACCGTCACCACCAAGAAGCCCCccccAAGCCGTTCCCCGGAAAACGTGTCTTGGAGGATCGACGGCACATGGGTGACGGTGGCCTGGGATCACGTCAAGGCCCTGAAGAACGAGTCTGCTGTCTCGAGTTACAAGGTCCTGTACAAACACGAGGGCCAGGTTGCTCTAAAGGTCCAGGACAAGAGCAAGACCTCCATCCGGCTGCCCCTGCCCCAGGACAACGGCTATGTGGTGCTGGAGATCTGCGCctctggggaggggggtgacGGGCCCCCTCACGAGATCATCGTTTCCAGGGACTCAGGCACTGGCATGATGGTGCAGAACTCGGCCAGGGACCTCACCCCCCTTCACACGGTCCTCACCACCACTGCAGTGATGTTGGCGTTCATCGGCCTGTTGGAGCTCTGAGTGCCGCCTGATTGGCTGCCGGAGAGTTTGCGTCATCAGAAgcatctcacacacactgactctgaGAATCGAGTCGGGCACAGAGACAACTAACGATGGCGTACTAATCCTCCTTTTTGATagtgaaaacagacagacaaacataaacattttctatGACCAGGGAATTGCAGAAGGGAGAAAAGCCCAGCGGGAGGACACTCCAGTGtgaatatttgaattatatccATAGAAATATGCCTTACGGAATATTAACCTTAATATTTAGACCTTTTAGGAAGCCATTTTACCGTCACATAGTGAGCAGTATTTCCCAATCTGGGTTTCCACTCCCCCTCACCCCACCACTCCCCGTGTGTGAAATCTCAGATCCTGAGATCTGCCTGGGCTCTCCAGCGTTGCAAGCCTCACGCTGAGCAAACGTCTACAAGCAGAACCGTCACAGAATAAAAATACTACGACTACCACCCTAACTCCTCAGTATCATGAACCAGGAGTTCGGATTGACAAGTCTGGATGAAACACTAACGTAGAGcagtttttaaaaagggaaaacaaaataaggcCACCATTTCTCCAGTGATTTACTCAGGAGTGTTTGAGGTCATCAACATCTggttgtaaatatatacatttcctgaacttattttgcttttaatggcATTTCTTTATTCATTGACTTTTAAACTCAAGAACAGACAGTGTTACCATAGATATTTAGATACCAATTCGAAAAGTGTGTTAGCATGTGAGACTCGGTGAATCGTCTTTAAGGTGATGGATTGTAGAGTCTGATTTTGAGCAGGGAGAGGGGTGTAGATCTCAAAAATCAGGAAGAGTTTGACTCTTGTTCAActtgtagtaaaaaaaaaaaaaaaaaaaaagcaacatagTGGAAAATGCAGCCATCGTAATAAAATGAAGAATCCTGGCATAGTAGCAGGGATAATCTAGCTTCATTATTGTTCCATGATCATGCGCCACCCCCATGGCATAAAGACTGAAGTTCAGTAACGTTTGGCTGCCAGATCCTTCTCTAGGTTAACGGTGGCGTGTTGGAAACTTGGAAAATCAGGTGTTCCATCACATGGTGTAGTGTGATATCACCTCCACGCGGGCCGGAGCACAAACCAGCCAGATCAGGGAGGGACATCTGGACAGTAATTGGCAGGGTCTTGTTGAAGAAAGTGTGTTATCTTTGTacatagtttttaaaaatatactcaCCTTTCATTATATACATCACCTTCTCGTTTGTCAGTGCTTAGATTcactcctcttcttcttctggaAGACCAGAAAAATGCATAACTGGATATTTGAAGGTATATTTTGGTTGTGAATGAGCCAAAACTGTGAAACACTGCTCACTGACGGAGGCGGGTTCCGAATGTGTTGTATCTTCTTAAATTGCACACAAAATACTAGGAATTATGGTAGGAATAAGATGGGATACAATTTGTTTGTACAGAGCAAGTGGATGACTTTAGAATATCTCTTTGTGGTTTGCTGAACAAATGGATAAGGTGGGGATCAGGAAGTGTcgttttgtaatacattttaattgttgcaTAGTTAGGtgacattcacacacaaaaataaatacatccatgaATAGATTAATAGATAAGACATTAAAGCGCACGCTACATCCCACTGTTGCGTTCATGCAATGCAGTAGCTTTGTACCTCGCAATGTTTCCTAGTGCTTAATGAACTCAGAAGTGGCCCTTTGTGAGAAGTAACACATGCATTTTCTACGTCTAGCATCAGAAAGAGAGATGCAGGGCATCACGTCAGTTACAGCTgcagttgggggggggggggacagtgCTTGCAAATGTACCCGAGGGTCCGATTGTATGTCAAGGATCCCTGCCTCTGCTTTGCCCTCCATTCATTTGTGCACTGCGGGCCATACAGGGTGATTTTCTAACTGATCTTCCTATGATTTTCTAAAAGATTTTTTAAgtaacgtaaaaaaaaaaaaaaaaaaagcgggGCAAATTTTCATGGCCTTAATATCATTAAGAGGCCTCCAGTTTTCTTTACCTTCACATAGGGGCCATGGTCCAGCTGTCAATAATTCGAGCATACCACCTGAATTCGCTGGCTATTTGCCAGATACTTATGGTTATTGTTGCCAGATAACGATATTTTGGGCTACTGATTAGTTGAATAAATCAGTCACTTTCATCCCAAGCGAAGAATTCTGGGAGGTCCGTCAGAGTCCTGTTAactttgtgtgtctttttcaCAAAAgcagtttgtatttctttgcCCATCTGACCTAATGATAACTTATTTGATTTGGGGGAGGCTGTGCAAATGAGGTGAAATACaatcataagaaaacaaataaatgtatttgatgcaGCAGACTGAAAACAGAGTTCGCTCTCTGTCCTACAGTGATGTCACCGACCTCAGTTTTTTTATCAATGACCTTCACTGATGTTCACGTTTCAAAGCACCTCTGATCTGATGCTCCATTGGCAGAGTTTGTTAGTGGTGTCCCTGAAAGCAACGTCCTTTTCCATTTGTAAATGCGTTAATTTTCCTGTGTAACTCCCATGTTGTTTAATAAGTTGTTACCTGATGACTGTAAAGGAGGacttcaatgtatttatgttagttggaaactttattattattattttatttttttacagcctCCGGTTTCCGGATAAAATCGCAAACTTTAGTGTCAGTTATTTTAAGTGTCAAGCGAACACAAGTACACGTGAGCAGATGTCAAAAGGTCATTTAGCCGGTGTTGCTTCACATTTCACATAATATCTTCCTTCGTCTCAGCCTCATCCACTCGGCCATGACGAACGACAGCCACACCCAGACAAGCAGTTCCTCATTGTCCCGACTGCAGTCTTTTACAGAAAACCCCCAAAATGTACACCTCCTGACTTGTATATATGCGGCTCTCCTTTTGCAATGTCACAGTTTCGTTTGGAGAAACTTGTTATTAGCTCATCTGCCTGAGAGTGTCTTTGATTAAAATTTTCTGGTGTCATTTGCAAGTCCATGCTCGATCCGAGCCCTTTGCCTGTGTCTGTATCTCCGATCTGGGTGTGAGTGATGAAACAGATTTGAGTCGGTGCTCAGCCTAGCGTACTTTATGTTAAACACTGCAGTGTCATTGcctttttatcattattattagtattagaaCTTCTCagatttggaaaagaaaaaggtgttTCATTGTTGTGCTCTTACCAAGGGTGTCTTGTAGCTCGGAGCTGTAGCAGGGTTTGGACTGAAATCAGGCTGCACCGTTTGAACCGGGCCTTCAGTCTCTGGTTAACCAAAAGGCTAATTTGTAAATGGAATTGAAATGTCTTAATGGCCACACCAAAACTTTGGAgttatatattgaaaaaatatataaacaaacagaaaaactgcaCTTGTACATTATCATCAATAAACATCTTGggattgtata

Function

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0007417 central nervous system development biological_process

KEGG:

id description
K06760 CNTN2; contactin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013933 True 6512 mRNA 0.51 21 47275671 47290041

Neighbor

gene id symbol gene type direction distance location
AMCG00013931 NA coding downstream 842 47244382 ~ 47274829 (-)
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding downstream 34867 47230559 ~ 47240804 (-)
AMCG00013928 NA coding downstream 58325 47213599 ~ 47217346 (-)
AMCG00013929 NA coding downstream 63246 47201255 ~ 47212425 (-)
AMCG00013925 NA coding downstream 113670 47151091 ~ 47162001 (-)
AMCG00013934 nfasc coding upstream 33670 47323711 ~ 47368062 (-)
AMCG00013936 NA coding upstream 120327 47410368 ~ 47416382 (-)
AMCG00013935 NA coding upstream 131267 47421308 ~ 47431479 (-)
AMCG00013938 mdm4,LOC107739268,LOC107675838,LOC107656004 coding upstream 262093 47552134 ~ 47564711 (-)
AMCG00013937 NA coding upstream 277062 47567103 ~ 47571775 (-)
G47766 NA non-coding downstream 48417 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 155070 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 200643 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 436907 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 1037157 46231325 ~ 46238514 (-)
G47807 NA non-coding upstream 205370 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 250522 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 399804 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 726520 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 889226 48179267 ~ 48179685 (-)
AMCG00013932 ruxe,snrpe other downstream 74774 47188595 ~ 47200897 (-)
G47666 NA other downstream 400301 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 964553 46299161 ~ 46311118 (-)
G47501 NA other downstream 1112184 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1192129 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 574809 47864850 ~ 47868863 (-)
G47896 NA other upstream 677384 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1076002 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1165862 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1527942 48817983 ~ 48821156 (-)

Expression


Co-expression Network