AMCG00013938 (mdm4,LOC107739268,LOC107675838,LOC107656004)


Basic Information

Item Value
gene id AMCG00013938
gene name mdm4,LOC107739268,LOC107675838,LOC107656004
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47552134 ~ 47564711 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013938
GGAGACGCGGAGGGGCCTGTACGGCGGGTTCACGGCAGATACGCGGGATTGAGCGACGCCAGGGCGGATCCCCGGAGCAGACACACGCCGCGGCTGGTTCAGTTCATAAGTAAGATGTAGGACCAAGAACGAGCCGCGTACAGAACTATTTCACTGCCAGCCATGACGACCGCGTCAACCTCAGCGCAGCACCCAGTGTCCAGCCCGGCGTCCAGACTGCTGCCCGGGGAGGGGAGCCAGGTCCAGCCCAAAGCCCCACTCCTGCAGATTCTGCATGTCGCTGGTGCTCAGGAAGACACTTTCACACTGAAGGAGGTGATGCACTACCTGGGCCAATACATCATGGCAAGGCAGCTGTATGACAAGCAGAGGCAGCACATTGTCCACTGCCAGGACGACCCCCTGGGAGAGCTGCTGCAGGTGGGCAGCTTCTCCGTCAAAAACCCCAGTCCTGTCTACGAGATGCTGAAGAAGAATTTAATTGTTCTAAATTGCACAGACGCTGCAAAGACTCTTTCTGTCGCCAAGGATTCAAATCATGAGACGGCGAGCGAAGATCCCGGTCAGGAACGCTTGCTGTCATTTGGCCTAAACTGTGATCGCAGGGCAGTTCAGTTCCTGAAGAAATCTTTCACGGAAGAAATCAGATCATCATACCAGGATCCGTCAGGCAGAGTGGCACCGTCTCTGTACCTCCCCATCGCGGGGGTCTTCTGGTGGTTTGCGATGGAGAAACGGCCTGCTCTTCTTTCAGGAAGCCACCAGGGATTCCCGGCCGATGGGGGACAGAAATTCGTGGTTTTCGTCCTCGATGGCGGGTCCGGTTTGCTAACATGGCTCCTACTTCCTCTCTCCACCGACAACCAGACATCTAGCGGCGACTGCAAGCTGACCCAGGACCTGACGGCGGCGGGGACGGGCGCGTCCACGTCACAGTCTACCTCACAGCGCCGGCAAAGGGAGACCGACGGAGACTCCCTGGACGGCCTGCCCAGGTCTGCGTGCAAACGGCCCAAGCTGGACTTCAGTCTGGAAGAGTGGGACCTGTCCGGGTTGCCCTGGTGGTTTCTGGGAAACCTGCGCAGTAACTATGGGCGCAAGAGCAACGGCTCCACGGATATCAACACCAACCAGGACGAAGACACGGCCATCGTCTCAGACACGACCGACGACCTGTGGTTCCTGAACGAGGCCGAGAGCGAGCAGGTCAGCGTGGAGATGAAGGAGGCGGCCTTGGAgcgagggagtgagggagaggaggacGAGAAGGACACGGGCAAGGAGGACAGAGAGGCCCTGGCTCTCAGCAGCGCTGCGTGCCTGCAGTGCACCAGTTCGGCACAACGCGGTGCGCTGCAGAACCGTGCAAAACGGGCCCGTCTTGAGCCCGCCTGCTATCAGATTCAGCGCTCTCTCCGTGGCATTatgCAGGACAGTCTGGACGACGACACTCAGTGTCTGAGTGACGACACGGACACCGAGATCTCCACACAGGACGCCTGGCAGTGCACCGAGTGCCGCAAATACAACTCCCCGATTCAGCGCTACTGCGTCCGCTGCTGGGCGCTGCGCAAGGACTGGTTCAAGGACTGCCCTCGTCTCGTTCACTCCCTCTCGGTGCCAGACATCCCCGCCGGCATGGGGGCGCAGGAGGATGCAGAGGACGACGGTGTCGACGTGCCGGACTGCCCCCGCACGGTGTCGGACCCCGTGATCCTCCCATCCCACTGCTTGGAGCGGCCGCAGCCCCCGGGCAAAGGGAAGGGCCGCCTGCCACGCCACCTGAACCCCCGCTACTCGGGCCCGACCGGGGGCGAGAGCTCGGACAGCCAGGAGCTGCTGGACGAGGCGGCGGGGACGGGCAGCCGGCAGGAGGCCGTCCTGGAGCCGTGTAAGCTGTGCCGGGTGCGCCCCCGCAACGGCAACATCATCCACGGCCGCACGGGCCACCTGATCACCTGCTTCTCCTGCGCCCGCAAGCTGCACAAGGTCCACGCGCCCTGCCCGGGCTGCGGCCAGATCATCCAGAAGGTCATCAAGACGTTCATCGCCTAGTGCCCTCATGCGCTCCTCCTTTctacacatctctctctctctctctctgctcctgtACATTCACTTCCCTGTGTCTCtcattgctttttgttttggtttattgattaatttattttgttggacTTGATGGCACGCCTGGAATATGGTACagagatgtttttaatttaatttttcaataattaatatggacaacacttttttttttttttttttatgtaaagaaTCTggaaggtatttatttatttattgtggaaGCCTCCGATGGTTTTCTCGCTGTCCAGACAGAACAAACCGGCTGACCCTTCCCAACAGAAGCAAAACCCCCCCTTCAGCTTTCAGTCTGCATGTATTTCACCCCCGTAAGAGAGCAGTATTGAATTGACATGCTTAAAAATCAGTGCCAAAGatttgagtgtgtgagtgagtctgGTGGTGCTGATGGCTGTTCTCCAAAACTTAACTTTGAGGGGTGTGGTTGTCAGtcttgtgtaaatatttatctaTTCTTTACTGTTGGACAATTCTCACTTCCTGCCACTGGCTTTGCCTCCCCTCCCACCTCCGTGGCTGAGGCTGGCCACAACCAGACATCGCTCTGCAGCTACGCTGTGAGATCTGAGTGCGAGGTACAGGTTGCTTTCTGTGTGTGCATCGGACcaattttttaatattttttaaactaatagtGCTCCAGAATCGCTGCCTGAATCCGCAGTTTTGATCTCGTTGCTGTGCGTAGTTCCCCTGGACGTAGCGTCTCCCTCCCCGTTCCTGTGGGCAGAGTGTTTATTCTTTGTAACAAAGTGCTGATTAATTTGCCTCAATTGCTTGTGTTCTCTCACACCATCGTCGTTTAGTTTTATTTGGCTTAATTTGTGGCCCAGCGTGCCTGTGGGCGGCGGACTGTGAAGGCAGACTGCTCTGGTAATCAATACTGATTTGGCCACTAAAGACTCGCTTGTCCCCCACTTACAGTATGACCATTTGAACAGCTGGCGTTACCACGGGAGCTACCTTTCTCACAAGtcagatctctctctcacatgctGTCCTTTCATTAGTTTCTAGGTACAGActtggcagtgtgtgtgtgaagtgagAGAGAAGTCCAGGCAGCAGGGGTCagggttttatttgtatttatttctgctccCATCCCGAGCGGCTGCagagagaccactgcaattctGGAGCCATTCTAACTTAAGggaaagatggaaaacaagaacaacgacgagaagaaaaagaaagcttttCTCTGTGATCTCAGCCAGAACAGGTGTTCGCACCGGGACGCTGATAAGTCGGGAAATGTACAGATCTCCCGCAGACGTGACGGGAGTATTAAcggctatttattttttctgtataaaaGTGTTgtctttgtatatataaaagaaaataatgtatgtggAGATTTAGAAAATGAATCTGCTCTCTGAAGCTTCTTTAAAGAGTAACATAATGGGTGTCTAATCTCTCGCTCCGTGATGTTGACCGATCGACAGGCTGTTCTGTGCCGTATGCGAGTATCTCGCTTGCGCATGCGGCCGGCTGTGAAATCTGGCGTGCGTAGTTCAGATAGTGCCGTCAAGTTCCAGCAGGCTGTTTAATATGCAACGCTGTGCTTTTGTGACGCTtgtagggggggggggatataataataatccctgGGCTTATGTACTCGTTTAAATGAGTTAACCGACTCATTGTCTTGTGCTGTATGAGCCTGCTGTAGATTTTGATGAAGATGGGGatggcaggaggtggagggcagttGAAGCAGCCCCCGCTGAAGCCCGTTGAACCCCCCCCCGCCCTGATATCTATATCTAGTCGGTGTCTGTTCACGTACAACTTTCACAAATTCAGCGCCACGAGCAGTATTGACGAAATGCTGCCGTTTTGGCGGCGGATGTCCTGAACCACGATTCCACCTACATCCATCAGCTGTTGCACTGAAGGACTTTATTGAACGGAGCACTTGAATTCGCCAcagttatgttgtgtgtgtgtgtttgcttacTGTGTAACCGTTAAGGGCATGCTGCCGTGAGAGCGGCTTCAGCGCTGACGAATGCGCTTTGTATCTTATTGCCACATGTTTGACAACCTTTTACATGCGTTGCTTTGGTTGGTCTGGGTTCCTTTGCTATTTTCTGTTCCTGGTCAAGTTGACCCAGCACTTTTTCACAGCTAATTCTCGGCTCCAGGCTGAGAAGTTAATTTAGCACGGTTTTTATTACGTATCCGAGGACAGGGGTGGCAATAAGTCTTCCCGTGACAAAGCGCTGTCTTACCCGGACAGCTATGTGGGCCATGCATTTTTCATGATGGTAACCTTACTTTCATGATGTTTTCAAAGAGAGCCATGTGGACTTGCAGTACCGGCCCACTTATTTTCTCTGGTACAACCCAAACTGGAACGGCCTGCCATTTAACGGGAGTTTTATTGCGTTCTTGACTCTTAGGTGCCACACTATCCTGGCACGGACAGTATTTGGACCCGTTTGTGTCGAGCACCACACGGGTCTAGGTGTCTAGTTTTATTGTCTCATCCTCTGGATCAAAAGCTCAATCACTGCCAGTGTTTGTGACCCTGTCGGGGGAAAGGTCTTCCCTACAGGGCTCTTGAAATGTGTCTTATGTGTTGAAAATCATCACTGCcatattgaaaatgtacttgATTGTTTGACCCCGTTTGAGGGTGTTTGCTGGAAAATGAGTGCTAATCCTGTTTTGAACTTCCCAGTGTTTtctaaatatgtgtttaataaacaaaatacaccggctttgtttttgtttgtaattaattatt

Function

symbol description
mdm4 Predicted to enable p53 binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process and regulation of cell cycle. Predicted to be active in nucleus. Orthologous to human MDM4 (MDM4 regulator of p53).

NR:

description
protein Mdm4 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013938 True 4873 mRNA 0.52 15 47552134 47564711

Neighbor

gene id symbol gene type direction distance location
AMCG00013935 NA coding downstream 120655 47421308 ~ 47431479 (-)
AMCG00013936 NA coding downstream 135752 47410368 ~ 47416382 (-)
AMCG00013934 nfasc coding downstream 184072 47323711 ~ 47368062 (-)
AMCG00013933 NA coding downstream 262093 47275671 ~ 47290041 (-)
AMCG00013931 NA coding downstream 277305 47244382 ~ 47274829 (-)
AMCG00013937 NA coding upstream 2392 47567103 ~ 47571775 (-)
AMCG00013940 LOC103386459,LOC108250956 coding upstream 18874 47583585 ~ 47623958 (-)
AMCG00013942 NA coding upstream 144502 47709213 ~ 47715995 (-)
AMCG00013944 NA coding upstream 284568 47849279 ~ 47857162 (-)
AMCG00013945 NA coding upstream 304714 47869425 ~ 47907166 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 6543 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 56450 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 324880 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 431533 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 477106 47071343 ~ 47075028 (-)
G47839 NA non-coding upstream 125134 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 451850 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 614556 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 651164 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 704633 48269344 ~ 48270564 (-)
AMCG00013932 ruxe,snrpe other downstream 351237 47188595 ~ 47200897 (-)
G47666 NA other downstream 676764 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1241016 46299161 ~ 46311118 (-)
G47501 NA other downstream 1388647 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1468592 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 300139 47864850 ~ 47868863 (-)
G47896 NA other upstream 402714 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 801332 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 891192 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1253272 48817983 ~ 48821156 (-)

Expression


Co-expression Network