AMCG00013939 (lrrn2,LOC108425772)


Basic Information

Item Value
gene id AMCG00013939
gene name lrrn2,LOC108425772
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47541233 ~ 47543434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013939
ATGAGTTCCCACAGCCTCGGATTTGTGCAAGCCCACCTCCTCCTGGGTGTCGCCGGCGCTCTGGTCATTCATTCTGTGCCTTGGAAGGTGCCCTGCCCCCGGCAGTGCGTCTGCCAGATCAAACCCTGGTATTCCCCGCGCTCGGTGTACAGGGAAGCCCCCACAGTGGACTGCAATGACCTCCTGTTGTCTGAGCTCCCTGCCTCACTGCCAGCAGAGACTCAGACTCTCCGCCTGCAGAGCAACCTCATCAGTGCCCTGGACCAGAGCGAGCTGCAGGGCCTGGCCAACCTGACCGAGCTGGACCTCTCCCAGAACAGCTTCGGCAGCACCAGACATCTCAGGATCACCGACTTGCCAGGACTGCTGAGCTTGCATCTGGAAGAGAACCAGCTGAGACACCTTCCCGACTCGGCTTTCTCTGGCCTCTCAGGACTGCAGGAGCTATACCTGAATCACAACCGGCTGAGGAACATCTCACCCGGGGCCTTCAGTGGTTTGGATAACCTCTTGCGGCTGCACCTCAACTCCAACCGGCTTGTGATAATCGACCGCCGCTGGTTCCATGCTTTGCCGCAGCTGGAGGTCCTGATGATTGGAGGGAACCCAGTAGAGAGTATCCAAGACCTCAACTTTAAGCCCCTTGCTTCCTTACGCAGCTTGGTCCTAGCTGGGATGGGATTGCGCGGGCTGTCCGAGGGGGCCTTGGAAGGATTGTGTAGTCTGGAGAGCATCTCCTTCTACGATAACCACTTAACTAAAGTACCAAAGGAAGCCCTTCAAAAGGTGCCAGGCCTGAAGTTTCTGGACCTGAACAAGAACCCCATTGAACTTGTCCAGCCAGGAGACTTCAGAGACATGCTTCACCTGAAGGAGTTAGGACTGAACAACATGGATCACCTGGTCTCTATAGAGCATTCTGCTTTGGAGAACCTGCCAGAGTTGACCAAGCTTGAGATCACCAACAACCCCCGGCTCTCCTACATCCACCCCCAGGCCTTCCAGCGCCTCTCGAGGATGGAAAGTCTGATGCTCAACAGCAATGCTTTGAGTGCCCTGCACCGGGAGACAGTCCGCTCCTTACCTGGCCTTCAGGAGATCAGCTTGCACAGCAATCCTATCCGTTGCGACTGTCTTATCCGATGGGTGGGGGCCGAAGATGACAGACCTGTTCGGTTCATTGAGCCCCAATCTACCTTCTGCTCCGAGCCACCAGAGCTCAAGGCAAGGAGGGTGAAAGAAGTGTCCTTCAGGGAGATGGCAGACAGCTGCTTACCCTTGATTGCTCCTGGGACATTTCCTTCTCACATTCATGTCAGACATGGGGACAACTTGGCACTACACTGTCGGGCCTTAGCGGAACCAGAACCTAGCATCTATTGGGTCACACCTTCTGGTCAGAAGCTCTCACCTTCCACGAGTTCTGGGAGGTACCAGGTACTACCTGAGGGCACCTTGGAGATCTTTGGGATAACCTCGGAAGAAGCAGGGTTTTACACCTGTGTGGCACAGAACCTAGTTGGAGCCGACACTCGCAGTGTGACCGTCAGGGTGGATGGGATGGGCAAGGCCGTAATGATCAGCACCAGAAGAAGCAGTGATCACCTGGAGGTGAAGGAGGTGAAGGAACGCTATGCCTTGTTGTCTTGGTCTACTAGCAGAAATGTACCTTCGGCCAAACTGTCCTGGTTAGCCAACGGGAGCCTGGAGGACTATCACCCTCACAGCACGCGGATCCTGGCAGGAACCAGAGGGTTCAACCTGACCCGGCTCCAGCCCGGTACCCTGTACAGGGTGTGTCTGCACCTGGGCCCAAACGACACCTCCTGTCTCCATTTTAGGACTAAAGAGGTTTCAGCCCCGGCGACAACTCCTGATCTGACCCCGGCTGCTATCCTGGCAGCCTCTGCTCTGCTTCTCCTGTTGGCAGCCAAAGCCTGTCAAGGTGGTGCCTCGGTCAGCTGGCGAGGGGAGGATGAGGGGACTGAGAAACCAGAGACATCTCTTTTGCCCCCTGAAAGGGAGTGCTACATGGTCCTCTCAGCTGCCCAGCAGCAGTGCTCCAGTAAGAGCTGCACAGACAGCgacggcagcagcagcagagaggaAGGGAGCGCTGTGGGCTTGGCTCAGGATGCTCTGAAGGTCCACATTGTTCAGGGCCCCAAGGCAGAATTGTGCAGTGTCGAGcattcccattaa

Function

symbol description
lrrn2 Orthologous to human LRRN2 (leucine rich repeat neuronal 2).

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 2-like

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013939 True 2202 mRNA 0.56 1 47541233 47543434

Neighbor

gene id symbol gene type direction distance location
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 409057 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 456195 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 514259 47026485 ~ 47026974 (+)
AMCG00013918 NA coding upstream 528971 47010292 ~ 47012262 (+)
AMCG00013912 LOC106565692 coding upstream 670520 46858640 ~ 46870713 (+)
AMCG00013941 LOC106566646,LOC106571888 coding downstream 181000 47724434 ~ 47730274 (+)
AMCG00013953 NA coding downstream 542525 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 556242 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 601964 48145398 ~ 48158245 (+)
AMCG00013960 NA coding downstream 683981 48227415 ~ 48234227 (+)
G47797 NA non-coding upstream 120004 47421016 ~ 47421229 (+)
G47791 NA non-coding upstream 133681 47406616 ~ 47407552 (+)
G47767 NA non-coding upstream 282475 47256497 ~ 47258758 (+)
G47762 NA non-coding upstream 292244 47232054 ~ 47248989 (+)
G47728 NA non-coding upstream 384529 47147355 ~ 47156704 (+)
G47804 NA non-coding downstream 1758 47545192 ~ 47545591 (+)
G47810 NA non-coding downstream 8725 47552159 ~ 47583902 (+)
G47936 NA non-coding downstream 515299 48058733 ~ 48059592 (+)
G47937 NA non-coding downstream 516481 48059915 ~ 48060814 (+)
G47958 NA non-coding downstream 618777 48162211 ~ 48162427 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 313264 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 467525 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 1582039 45943571 ~ 45959194 (+)
G47398 NA other upstream 1599327 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1718005 45816372 ~ 45823228 (+)
AMCG00013943 NA other downstream 208780 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 696266 48239700 ~ 48258433 (+)
G48018 NA other downstream 725320 48268754 ~ 48269272 (+)
G48026 NA other downstream 737629 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 990452 48533886 ~ 48546200 (+)

Expression


Co-expression Network