AMCG00013948


Basic Information

Item Value
gene id AMCG00013948
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48031392 ~ 48048066 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013948
atttttatgtttgaagACCTTGTCCCAGCGCGGTGCCTGGCCTGCACTTTCACCTGCTTGTGGCAGCTGTACCGTCCGTCACTGAGGCCAGATCAAGTGTCGGGACAGCCCCGCGGAGAAGCTCTCCAGCTGGGTCGGGCGTTCATAGCATACCCCGGTGTGTCGGCCCTCGCCGGAGCCCGACCATGCCCGTGTTCGTGGACGACCCGAATCGGCTCTCCAAGGAGAGGCTGCGGTCGGAGCTGGTGGCCCACAACGTGCCCCTGCCGCCGGGCGAGACCAGGAAGCGGGTGTTCGTGGACCTGTACCTGAAACACGTGGCGCACAGGACGGCTGCGGATTTCTCCAGCGACGAGGAGGACCAGGCGCCCGAGGACGGGAGTGAGGAAGCAGGACTTGAAGAGGAAGACGACGAAGGGGATTCAGAAGTGATGGACGTGCACCAGCTTACGGACGAGGAGCTCAAGGCAGAGCTGATAAAGTATGGGGTGAAACCAGGACCCATCCTAGCAACCACTCGACAGCTCTACGAGAAGAAGCTACAGAGACTGCTGCACCCGAGCGATGGACAGAAGGCCCCCCCCGACGAGGAGCACTACTCTGACAGCGAGGAGGATGAGACAGGTTCCGAATACCAGCCACACAGAGCTGCGAAAATGCCCCCAAAATCCGGTCCAGGACAGAATCACCTGGGGCCCAGCAGAGGGGGGAAACCCACGCCGGTGCTGACTGTCCATGTCCCCCGGCCCAGGAGTGGCCCCAGCAATGTGTGCAAGACTGCGCCGGACAGCATCCAGGCCCCCGTCTCTCCCTTAACCCCTCTGAGGAGCACCTTCTCTGGGCTTCCTGCAGGACCAGCGGTGAGCCCCCTGTACACGTCTCTGCAGGGCCTGCGGACCGCCAGCTCCCCCGGCTCCCCCGGTTCCTCCTTCAGCATCGCCAGACTGCTGGAGAGCCGGTCGCCATCCACTCCGCCGGCTGCTACAGAGAGATTGGACAGCGTGGGCAGCAACAAGACGGGCAGCGCGACTATGGTGAAGAGCCGGGGGGGTCTGATCATGCTGGACAAGAACACCATGACGTGTGGAACGCCGAACATCGCCCCCATGGCCTCCCGGGGAGAACGTTTTGGGGGGGTTCACGTCTCAGTGTTGCACACAGCAGGGGGGCCCGCGGAGGACGATGTGCTACAGGAGATGTTCCCCAATGAAGTGCGGACCCCCACAGGGATCAGcGCCACGCGTCGGAGGCCCATCAAGGGGGCGGCAGGGCGGCCTGTCCAGTTCAAGTACAGCGACCTGGTGCCCCTCGCCAGCTCGGGGGGCCTGGACAGTCTGGGGCTGTCCAGGCGGCTAGTCCCCATCTGGGCCCAGGTCCTCGTCTTCCTCCTGCTGGCCGGCTTCCTCTTCGTCCTCTACTGCGCCATGGAAGCCAACTCGGACAACCCCTTCACGGAGTACATCGACAACGCCAGCACGGGGTCGGAGGTCATGCAGGAGCCCCCCCCGGCGATGGATGCTCAGCTGCCCCTGACTCGGCAGGAGTGACTCAGAGACCAGCGCTCCCCCTCCCCAAGCTTCCCCCCTGGCAGGTCTCCTGGACTCGGTGTCTGGTTTCCATTGGACTTTGATTGTTCTCGGCTTCTCTGCAGTTGATGGCAGCCTCTGTgatgttcgtttgtttgtttgtttgaggtGTTTCTTCAGCCCCTTGTGTCATAAGATAACGGGGTTTGTGTgactttttataaataaaaggatattttttaatttgatatacaaAAAGTCACTTTAAATACGATGTGTCTCCACCCGTGGGGGAACCGGAAGTAGCTGGAGATATAGGGCACCCATGGACACTAACACACGGTTTTCACACAAACAACCCTGAGCGCGGCCAACCCGCAACGCCgcagctttcaaaagaacaggACGGCGCGGCATGGGTCACCAGGACTGCAGTTGGGACAAATAAGACAAAAGCCCTGTAGACTCCTGTATCGGGCAGAGGTCGTGGTGTGAATATTTATTACAGCGTCTTCTGTCttgatttttgtgtatttgataGCCGGCCGGGACTCCTGCATTTGGGAGCTCGGGGAACGAGAAGGCAGCGCTGACGAGCCTCCCACTCATGAGCAGAGTCTGCGTCTGTGGATCCTAATGGGACTGTCAGACTTCTCTGCCTCGCGGAGTCTGAGATTGATCCTCACGTTCCTAGGGGACCGAGAGGGTCCAGACCTGTTTTCACCACAGCCTGGCTGTAGCCACCTGGGCGATCTGATCTGGCACAGACGCCAGCCATTTACTGAATCttgatagttttgttttcttaagccAGGCAAAGAAACCAGGACACTCGttttaaaaaacatcttcagGGAAAATTCGGACCTTCAGGCCACGCAGTCGTCAGCCATAGTGTTCGTCCTGCCAACTCATAACCACAGAATGGACTTCGTTTACGTGGCATTGAATTGCTCTGATGGTTTGGGTTCAACCCTGCTGTCTACTTTCCTTTcccattgttttttattgacaGTTGATTCCCGATGCGTGTGTTATAGCGTTGGCGGGTCGTTGTTGAAGAGCTGAAGCCAAAGTCGAGCAGTTGAGAGGGAGGCTGTCTGAGCTCTCTGTCGCTGCTTTTAATGAACATGAGATGTGTTGTGGTGCTGATCtttatgcaaatgtttgttttgttttttagaagtGTGTTACTGTGTAGAAATGTGTGCTGCAAAAATATCTGAAGGCAAAGCTTTAATAAAGAATTAATTTGGTACATGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013948 True 2791 mRNA 0.57 11 48031392 48048066

Neighbor

gene id symbol gene type direction distance location
AMCG00013950 NA coding downstream 7060 48022064 ~ 48024332 (-)
AMCG00013949 NA coding downstream 17141 48005699 ~ 48014251 (-)
AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding downstream 30321 47979589 ~ 48001071 (-)
AMCG00013945 NA coding downstream 124226 47869425 ~ 47907166 (-)
AMCG00013944 NA coding downstream 174230 47849279 ~ 47857162 (-)
AMCG00013955 NA coding upstream 112608 48160674 ~ 48165662 (-)
AMCG00013954 NA coding upstream 125306 48173372 ~ 48176981 (-)
AMCG00013956 NA coding upstream 131829 48179895 ~ 48180577 (-)
AMCG00013958 NA coding upstream 138221 48186287 ~ 48189302 (-)
AMCG00013957 NA coding upstream 154513 48202579 ~ 48212028 (-)
G47917 NA non-coding downstream 14554 48016561 ~ 48016838 (-)
G47839 NA non-coding downstream 336498 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 485801 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 535708 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 804138 47225801 ~ 47227254 (-)
G47991 NA non-coding upstream 131201 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 167809 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 221278 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 228670 48276736 ~ 48277321 (-)
G48044 NA non-coding upstream 260498 48308564 ~ 48344493 (-)
G47896 NA other downstream 56477 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 162529 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 830495 47188595 ~ 47200897 (-)
G47666 NA other downstream 1156022 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1720274 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 317977 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 407837 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 769917 48817983 ~ 48821156 (-)
G48373 NA other upstream 1436434 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1446661 49494727 ~ 49498630 (-)

Expression


Co-expression Network