AMCG00013949


Basic Information

Item Value
gene id AMCG00013949
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48005699 ~ 48014251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013949
CAGACAGCATGGCCGGCCACCGTGTCCGCTCCGCACTGTGCAAGCTCCTGAAGGCGGCCGGGCTCGGCgcggcgctgctgctgctggcccTGCTGGCCGTGGCGCTGCTGAGGACGCTGACGCTGGACGTGCACGCCGGGCTGCAGCTCGCCCGCTGGGAGAAGACGGACAGCATCCCGGCGCAGGTCAGCGCGGAGGAGCGGGCGCAGCTGCTGCACAACTTCAGAGAGGCCATACGGATCCCCACGGTGTCCTTCTCGCCCACTGAGTGCAACACCACGGCGCTGCAGCACCACCTGTTCACGGTGCCCGGCTCCGACCCCGAGCTGCAGCCCTACATGCTGCTCTCTCACATTGACGTGGGAATCCTGCAGGCGCTGGAGTATCTCCTGCAGAGAGGATACAGACCCCGGCGGGGTTTCTACATCGGCCTGGGTCACGACGAGGAGGTACACGGCCTGCAGGGGGCGCAGAACATCGTGGCGCTGCTGCAGTCCCGCGGCGCGCGGCTGGCCTTCGTGCTGGACGAGGGCATGGCAGTGCTGGACGGGGTCATCGGCGGCCTACAGGGTCCGGCTGCCATTATAGCGATCAGTGAGAAGGGCCATGCCAGCGTGAAGCTGAGCGTCACCACCGCCCCCGGACACTCCTCCATGCCCCTCGGCCAGAGCAGCATCGGCATCCTGTCTGCGGCCGTGACCAGGCTGGAACAGAACCTCATGCCCAGAATGCTGGGGCTCGGTCCGGAGCGGGGAACCTTCGAGCACCTGGCCCACAAGTTTGTATTCCCTCTGAAGTTCATCATGTCCAACCTGTGGCTgttctcccctctcctggccAGGGTCATGGAACTGAAGCCGGATGGCAATGCGTTTGTGCGGACGACCACTGCGGTCACCATGTTCCACTCCGGCGTTAAGCTTAACATCATCCCCCCCTATGCTGAGGCGTTCGTCAACCTGCGTATCCACTCGGCACACAGTCTGCAGGGGGTGCTGGAGGACATCCACAGCACAGTGGGGGATGAGCGTGTGAAGATGGAGCTGGTCCACGGTTTCGACCCCCTGCCCATCAGCTCCTACAGCGAGACGGCGTTCGGGTACCAGGTCATCAAGAAGACCATCCTGGACACGTTCCCCCAGGTCACTGTGGCTCCAGGTGTCTGTGTGGGGAACACGGACAGCCGCCACTACGTCTCCCTGACCGACCAGATCTACCGGTTCCTGCCCACCTGGTTCCGTCCAGGTGACCCCAGAAGGTTTCACGGTGTGAACGAGAGGATCTCGGTGAAGAACTTCGAGGAGCACGTGCTGTTTTTCCTGCGGTTCATCCAGAACTGTGACGTCCGCAAGCTGCCCGAGCCCCACGGCACGGGTCACGAGCTGTAGAGCCAGCAGGGCAGCTGCCGGCCTCCCCCAGGTCAGGTGTACTGTCGAGTGCTGGTCTCGTGTGATGACTCTGAGTTTGAAGCATACTTGGCACTGCCTGTGGCTTGAGCTGGTGATGTAGATGTATGGAGTAAAATCGCtgtcaaaaacattttgcaaagtGGATTTGGGACGATTACGATTCGAAGTTACTGTCAAAAAGTCGATTTCTCCCCCATTCGGCAGCCTGTGACCCGTGACGCTTTTGACCGTAATTACAGACAGCGATCCGACGAATGTTCCCACAGCGATTTTACTCCATGACAATACAGCTAACACCGTGCAGAACGCTTCTAGGGGTGACCCACCTATTTTTCTAAGTATTTTTAGAAATACTGCAGTTAAACCACTGATTACTTGAATGAAAaactaatgtattaatttttctttatttaatattacactTAACCTCAGTGCAGGGTTTGTACAAGTTCCTTGAAATGCttaaagtgcttgaatttgtgTCGTACTGGAATACCCAGTAGAGGAGTAGAGAAACTTTCGGTGGTTGAGCGCGAGTAAAGTGTGCGAAATCGCTTAGTTTGTCTATTAGGATAAACTATCGAATGTTTCAAAATGCCTGGaagatttaatttcaatttgacGTGGCTTAAGAAGAAGGAAGTTAACTAGGACTgtaagagtatatatatatataaaaaaaaacacgaagGCATGGTGTCGGTTTTGCCAGAAAAGCATTGATATAGCCATATGGCGATAATACTCGCACGCTTGTTAAATGACCGATTTCTGACCGATCTTGTCTGCTCGGTTAAATAGCAATATATTGTGCTGGGTTTTGTCTTGGTTTTGGGTTGTAAAAATCGCATTTGCATCGAAGTCTCGGAGATCTCTGGAATCAGTCCTGGAAAGTGTGTAAAAAGTCAACTGTCAGTTACTGTTGCCTACGCTGTGATTATTATAatctatattttacataaatggATGCCTTTTTCCGGGACGCAGAATGTTAGACGCTTCCTGTCGGCACCCAGGAGGACAGCATTTGTGAAAAATACGAAGGGGCCTATAGTGACCATCTGCCCTGCTAAAGTTTACTTTCAGACCTGGCCACAGTTCTCCGGTTAAGCCAGGTGTCTCGCCACAGACTTACCCGACGTGTCTAAAACCCGAGAGCCGCGTTCCACAAATATAATCTCCACATTCCCGGGGCGATGCTGGCTGTACGGGTTGGCGTGTTGGAggtgttggttttatttaacGCAGTCTAGACGCACTGACCTGTTTGGTCTTCTGCTAATCTGGCaggggggttaaaaaaaaaaaaaaaaaaaaaaacgaacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13049 PM20D1; carboxypeptidase PM20D1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013949 True 2736 mRNA 0.54 13 48005699 48014251

Neighbor

gene id symbol gene type direction distance location
AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding downstream 4628 47979589 ~ 48001071 (-)
AMCG00013945 NA coding downstream 98533 47869425 ~ 47907166 (-)
AMCG00013944 NA coding downstream 148537 47849279 ~ 47857162 (-)
AMCG00013942 NA coding downstream 289704 47709213 ~ 47715995 (-)
AMCG00013940 LOC103386459,LOC108250956 coding downstream 381741 47583585 ~ 47623958 (-)
AMCG00013950 NA coding upstream 7813 48022064 ~ 48024332 (-)
AMCG00013948 NA coding upstream 17141 48031392 ~ 48048066 (-)
AMCG00013955 NA coding upstream 146423 48160674 ~ 48165662 (-)
AMCG00013954 NA coding upstream 159121 48173372 ~ 48176981 (-)
AMCG00013956 NA coding upstream 165644 48179895 ~ 48180577 (-)
G47839 NA non-coding downstream 310805 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 460108 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 510015 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 778445 47225801 ~ 47227254 (-)
G47717 NA non-coding downstream 930671 47071343 ~ 47075028 (-)
G47917 NA non-coding upstream 2310 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 165016 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 201624 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 255093 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 262485 48276736 ~ 48277321 (-)
G47896 NA other downstream 30784 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 136836 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 804802 47188595 ~ 47200897 (-)
G47666 NA other downstream 1130329 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1694581 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 351792 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 441652 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 803732 48817983 ~ 48821156 (-)
G48373 NA other upstream 1470249 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1480476 49494727 ~ 49498630 (-)

Expression


Co-expression Network