AMCG00013951


Basic Information

Item Value
gene id AMCG00013951
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48145398 ~ 48158245 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013951
GCTGAGCCGGAGTCCCAGCGCACCTCGCCTCACTGCGCCGCGGACACAGCTGGAGCAagacgaggaagaggaggaggaggaggaggagggtctAAAGTTGCTCCAACTTGACGAAAGCGTAAAACAGAAATATCCGCCTACAGAGTGAAGCGCAAGGGAAACCTGCGGTAGATTGGTGAGCGGCTGCGgttcacacacactgatacacacacacacagctctcctGCGTCTGCTCATCAGCTGCCGAAACACCTCTATGTGCGTCTGGTTTTGCTGGACTTCAGATACCCCCTTAGACGAGCACAGAGGCTCCCCGGACGCGCGATGTGGGACGAGCGCCTGTGGACGCTGCTCCGGCGCAACCTGCAGCCCACGCTGACCTACTGGAGCGTCTTCTTCAGCTTCGGGCTGTGCATCGCCTTCCTGGGTCCCACCATCCTGGACCTGCGCTGCCAGACGCAGTCCACCCTGCAGGAGATCACCTGGGTCTTCTTCTCGCAGCAGTTCTGCCTGCTGCTGGGCAGCTCCATCGGCGGCGTCTTCAAGAAAACGCTGTTCTGCGCCCTGTCCGCGCTCTTCACCTCCACCCTCCTGATCTCCATGGTGTTTGCCATCATCCCTCTTTGCCACAATGTCCTGCTCCTCGCCGTGGCCATGGCCGTGGCTGGACTGGCCATGGGCGTCATTGACACCATCGCCAACATCCAACTGGTCAAGATCTACCAGAAGGACTCTGCCGTCTTCCTGCAGGCCCTGCATTTCTTCATTGGCTTCGGGGCCCTGGTCAGCCCCCTGATCGCGGACCCATTCCTCTCGGACACCAACTGCGTGGTGGGAAACGGCACGGAGAACTCCACCGAGATCATGCACCACCTGAGGAACGCGCTGGCCGGCACACCCCTGCACAACCTGTCCCACTACCACCTGCCCGTGGAGGGGGAGGTCGTCACACAGGTCTCCTACGCCTTTTGGATCATGGCGCTGATCAATtTGCCGGTGCCGATCGCGGTGTTCGCCCTGATGTACCGGGAGAGGCTGGTGCCGTGCTTGGCCGGCGGGAGCCCTCCGCTGCTGGAGAGAGACGAGCTGGCCATGGAGACTCAGGGGGAGGATGTGATGGCGGTCACCACCAAAGACCCTGACTCTGGAGAGCACGGCGACCTGTTCAGCTGCTGCCACAGCGAGACGCTCCGTGGGGCACCACTCTCCTTCTTCGGCATCCACCTCCTGGGCGGGATGGTGCTGTTCATGACCGACGGCATCGTGGGGGCGTACTCCGGGTTCGTGTACACCTACGCCGTGGCTCCGCCCATGGATTTACCGCACAAGACCGCCGGGTACCTGGCCAGTGTGTTCTGGGCCTCCATCACTGTAGGCCGGCTGGTGTCCATCCCCCTGTCCTACCGCTTTCCGCCCGTCCGTCTGCTGCTGCTCAATCTGGCCGGCGTGATCATCACCGTGCTGCTGCTTCTCATTTTCTATGCCAGCAGTGTCTTCCTGTTCGTCGGCACCTGTCTGCTGGGCCTGTTCCTCAGCAGCATCTTCCCCAGCATGCTGGCCTTCACCGAGGACATCCTGGACTACCAAGGGTGCGCCACCACAGTCCTGGTCACCAGCGCGGGGCTGGGCGAGATGGTTCTCCAGGTTCTGGTCGGATCTATCATCCACAGTGAGGGCAGCTACAGTTTCCTGTTGTGTGGGATGATCATCGGCTGCCTGGGCTTCTCACTGTTCTTCGGCCTCCTGTTCTTTCACCGCATGCACAGGATCCACCTCGGATCAGGTTCTCCAAGTAAAACAGCCAAGGTGGAGGAGCCACAGTCTGAAGACAGTCTGAAATAGAGATACACAGAACGATAGAGAGCGAGGGACATGGAGAGAGATGGAACACGGCCTGTCACCCCTGGGAAGGGAGGAGGAGACAACGTGAAAAAGGAAACCAGTTTACCTGAAGCCATCAGCACACTGCAGAAGGACTCAAAGACCTGCGCCTTTCACCTGAACTGTCCATACCTCCCCCGGCTCACTAACTTATCCGAGGTTTATTTATTCCTTCGTCGATTTCCCATTCCACAATCAAGGgtgtctgctttttttttttgttttgttttgtttttaattaccagTGGACACGATGACAGCTCTGACATCAGATCAAAGTGTATAGATTTCTCGTTATTGTAATTAAGGTACACCTTATGTTGTTTTCCATACGTTTGTCGAcagaaaatcattttttttatgtatatatgttaagGAAAATCATCtaaagcagatttatttttgtattcaagtGTTGATCAAATTAATCCTGACAAGAAGGTTCTTTTTGCATGCCGTTAAGCATTATGCAAAGTACAATGTGCGATATGCATCACACGTGCCAAAACGAGAGCAAGAAATAAGTATTCTCTGCATTTCTTCGcagcttgtcttttttttgcgACTTGATTGTGTCGGGCATGTGTGGGGAATGCAGAAGTGCCGCTCGCTCTGTGCTTTTTCCACAGGTCTCCATGTTGCTGTGCATTGTTAGGTAAGATGGAGGACTCTGGCAAGTTTTTGAATGGTGGCACTGGGGGGTGAATACTGTGGAATATATGTCTCCACCAAACTCCTGTAACCctgaaaaaaacacagccaCCTCTTCATTGAAAAACACAGGATGGGATGTGCCGCACACACGTGCAATCCAGGACCCCAGGGCTGTGGGGTGAGGACGCACACAAACCTCCAGGTTTAAAGTCATGTTAATGAGACACTTTTGGCCATTGGGCTTCATAGCCTATATTGTTGGCTATTTATTTGGTTTCGTTCACAGAAACCGTGGTCCGTCTGTGTGGAGTGAGATCCCATAGTGAGAACAAGTGACAAATAATGAGCCCTCACTCACTCCTGTGGCCCAAACCCAAGCACGTGCCAGATAAGGATCAGGCCTCATACACCCTCACCCTCTCACACACTCCTCCACTCTGACTGGGCACTAATACCTGCAGCTGCCGACTGCAGACACGGTCCTTCCTCTGGCTTGAGGGAGGGGCATCCTCCCATGGTTTGGTGGCACAGAGCCCTGCTCCCGTCTCGCCGGATCCCAGGGACCGAACAGCAGCAGCGGTAGCCGCCCAGTAGCGCTGCCCTGGCCCCTGCACCCTGCGAACCTCAGAGATGGTGCGATGGCTCTCTCTCACTGGCCGACCCCACCACTGGGAACTGGTTAAGAAATTAAACGATCAATAGAGAGTTAAAAGGATTTTCAGCCTAGCAGCTCTGCTGGACTCTGGTACTGACCGAGGGACCCCAGGAGCCAGTGCAAGTACCTCTGTGTACATGTGACAACCCACCGAACCCCCCCCCACTACCACTACCACCAGCTCATCCTTCAGCATCGACACAGACCGTTCTTCAGTTCTAAGATCGAGGGCAGGAAAGCAGACGTTCGCTGGTcgtatgtctttgtttttctcgtTTTCCAAGTTTTTGGTCCCAGAGGGAGCCCCACCCCTCTTCCACGGGAGTGGGGGGGAAAGAGAACAGCCCAGGCCCACACTAGCCCTGATACCCCCTCCCTGAGCTGCAACGTGATTTGTGTTGAACCTCAAACCCCGAGGCATCACCTGTATTTTGATCTGTTCTGACGCAGGACTAAACTTGTTTCAGACATTTCCTTGCATGCTTTTTAATGTGCaaaactgcacacagacagcctGGAACTTATCTTCAAAAACTTGATCATCGTCGCTGGAACTGgtttcattcattattattattattaataataattttatgcACTTAATTCCCTTGTAAAAACTTCACGCTGCGGTTTTGTTGCCGACATCTGGAATGCAGTATTCGGTCTTACCCTTGTAATtttggtttattaaaaaatgtgcgGCTTATAGCTGAAAAAGTGCCTCATGGctgatgttttctttgtatCTGTATCGTTCCTGAGAGGAGCGATGTGAGGAGGCACCGTGTTATGCATGCATCCAGAGAAAGAACGAGCGAAGAATTGCGAAGAATAGCAaccataacattttaattgatcttCCCTCTTGAGACTGTAAAGTGAACCCAAAAGCCCTGTACGAAGCCCAAATACAAGATCTGTAAACATGTCagaagcataaaataaaaaaacaaaaatacaaccgcagagaaagaaacaaaacgtACATAAGTTTTTTGATTATCCTACGTCAGTTTATgctcaaatatattttctctttcaacCACAAAGTATATGATTTagctttttaatatttgtaatttgatgACTGTAAAAAGTGACGACATTATAAAAATCTAGATATTTGTCTGACATCATTTTACTGAAGGTCTCGCAATGGCACCATATTGATTCATGTcaaacatgattaaaatattccaatagCAATATCACCCTCTTTAAGTACTTAAGTACatattaaaacctttttaagCATGGATACCTTCCGAGGTAAAAGATGATTATACCGGATCCATGGACACGGTGTGGGGCTGCCCCCTGCAGTACGCATGGACGTACGCCAAGAGAACTCCTGTCCTGTTGTCTGTCCCTCCAAACAGACACCATTTCCTCACAACAGAAACCAAAAGGGATCCTAAAATTCTCAGCCCACCACAATACAAgtggaacaaaatacaaattttccCATGTTGTCAGTGAATATAAAAATTTGCATAAGAAAGGGAAAAGCtggagaattttttttttttaaaaggcacacgcacgcacgcatccatgcacacactcgcacacacacgcatccacgcacacgcacgcacacagtTCGTTCAAAACCAGCATGTTTAGtctcatgaaaaataaaacatgagccCTCCAAAaaggttgtttttctgttcactgtGGTAGAAATCGTATGCTTGTACCGCAGCCACTGCAGTGTTTGTGCACactctgttttgtgttgtgtcaCGGTTGCTCTCTCACTCACTTTTTTGGCTATAATAACAGAACAGGCTAGTATACTGCTTTCCAAACGAGTGcattttggaaatataccaGGAGGAGAATGTGACAAGTAAAATAATCCCACCAGAATAACTACAGCTGCTCGGTACGGTGCCATAGCAGAGCTTTCCTCTCCACAGGGGTCAGGTGGACATCAcctcacacaaaacacattacagaagGCCAGGGGTTTTCCAGTTTTCTCCCCTTTCGCATTTATTTGTTGAGTGAAAAGGGGGGATTTGCGATTGTCCCAGTTTCGCCAGATATCAGACCCAAGTCTGAATTAataggtttaaaaatatatatttattaacgGCATATTTATTTACGACCCATTTTACACAGTTTAACGATGGCCGTCGTTTCACGTCTGCAGAGATCAGTGCTGTGCGAGAGACCAGACAGACGCGTGTCAGATCTGCCCACTTTGAAAAGGCAGGGCTCGGTaaaaaattgtgaaataatagTTTGATGGTCTTAAAACAGTACCTCCCTTCTGTGCATTTCTGTCTTATAAAAGGAGGCGTCAGTAGGGGGTATTATATAAGTTTcccaaatcaaattaaatgcaatacacatATAAACAGCACTTGTCATTGTCGTTTGCTTGAAATTTCAAGAAAGAGGGATCTCAATTTATAAAATTGATCATTCGCAACAATCGCAGGAGTCAAGGTTTGTGGAAAAATACATCTTAAGAAAATATTCCTATGGATCTTGTCCAGTTAAGTTGGCAAACACCCTTGCATTATAAAGTACTTTGTGCATAGATTTAGTTTTTGTCGTTTTGAAGAGAGGGGGGAGATGCTATTCAGATTTCCATTCTAgttaaaaaacaagcaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013951 True 5831 mRNA 0.49 10 48145398 48158245

Neighbor

gene id symbol gene type direction distance location
AMCG00013952 LOC108250382 coding upstream 1481 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 48315 48085959 ~ 48097083 (+)
AMCG00013941 LOC106566646,LOC106571888 coding upstream 415124 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 601964 47541233 ~ 47543434 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 1013222 47123708 ~ 47132176 (+)
AMCG00013960 NA coding downstream 69170 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 78518 48236763 ~ 48239245 (+)
AMCG00013963 NA coding downstream 260012 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 332299 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 344924 48503169 ~ 48504611 (+)
G47937 NA non-coding upstream 84584 48059915 ~ 48060814 (+)
G47936 NA non-coding upstream 85806 48058733 ~ 48059592 (+)
G47810 NA non-coding upstream 561496 47552159 ~ 47583902 (+)
G47804 NA non-coding upstream 599807 47545192 ~ 47545591 (+)
G47797 NA non-coding upstream 724169 47421016 ~ 47421229 (+)
G47958 NA non-coding downstream 3966 48162211 ~ 48162427 (+)
G47959 NA non-coding downstream 5626 48163871 ~ 48164673 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding downstream 6550 48164795 ~ 48165036 (+)
G47961 NA non-coding downstream 10394 48168639 ~ 48169640 (+)
G47972 NA non-coding downstream 20946 48179191 ~ 48179721 (+)
AMCG00013943 NA other upstream 325675 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 917429 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1071690 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2186204 45943571 ~ 45959194 (+)
G47398 NA other upstream 2203492 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 81455 48239700 ~ 48258433 (+)
G48018 NA other downstream 110509 48268754 ~ 48269272 (+)
G48026 NA other downstream 122818 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 375641 48533886 ~ 48546200 (+)
G48142 NA other downstream 596708 48754953 ~ 48760712 (+)

Expression


Co-expression Network