AMCG00013954


Basic Information

Item Value
gene id AMCG00013954
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48173372 ~ 48176981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013954
ATGGTCTCGGTAAACGACTGTCAAGTGTTGACCACCAGTCCTGAGGCACTGAGGGGATCTGTGGGGGCGCCGTATGAAAACTGCGCGCAGCCTTTCAAGGACCACGCGGCGGCCCCCTCAGCCAGCGATGAGGCCAGCCTGGGCTCGAGTCCCAGCCCTGGCTCTAAGGACACCAGCAGTCTGGGCTCCAGCCCAACCAGGGACGGCgagctggggctggggctgctCTTGGCCTCGGCCGTAGGGGAGGACGGGAAGCCCACCTGCGTGGGCCAGCAGGTCAATCTGCCGGACTTCAGCTCCGGGCTCCCGGCAGACTTCTCCCCCACGCTGGAGGAGATCGAGGAGTTCCTGAAGGAGAAGATGGGGCTGTCCAAGGAGCTGGCCGAGCCGCCTGCGCCCTCCTCCCCAGCGCCGACCTCTCCCTCCAGTCTTGACCGGGCTGCGGAAGAGGCGGTGGTGGACTTGACCCCCTCGCCTGCCAGTTCTTGCCTCGACGCCCCTCCCACCCCAGTCCTCATTGGCACACCCCTGCTCCTCCAGCTGCAGCCTGTGCAGCTCACCCACGACGCCGCGCAGACTCACCCCGGCACGCTCCGGCTGGCCCACCTGGTGCTCAGCGTGCAAGGGGCCCAGAGCTTTGCCTTGCTGCCCCAGGCCACATCTGCCACCCTGGTGCCCGTCTGCAACGGCGGCATGGGCAAGGATCAAAAGTATGTGAAGATCGCCCCCTTGCCCCTCACAGTGAGGGCCGTGGGGGGCGGCGCCAGCCTCCTTAAAACCGTCCCTGCCAGGACCGCCAAAGCGACGCCGGAGGTCCTGCGGGTCCATAAGTGCACCCACCCAGGCTGCGAGAAGATGTTCTCGCGCTCCGACGAACTGTCCCGGCACCGACGCTCGCACTCGGGGGTCAAGCCGTACCAGTGCCCGGTGTGTGAGAAGAAGTTCGCCCGCAGTGACCACCTGTCCAAGCACACCAAGGTGCACCGCAGCCAGAGGCCCAGCCGGCTCCTGCGAGGCAGCAGCTGACAAGCACACCCCTCAGCTctgctccctcctcctcccagcaCTTGATCTCCAGCACAGGGGCCCCCGGGAGAGACCACGCCAAGCGActgatatctatctatctatctatctatatatattttttttattattccatcctctacctattttttttttttgttcctcgTCCATATGTCTGTCCCCTTTAATTTCTCTTTGTTAAAATTTTACTTGGTTTTACTTATCTctgcaagtattttttttatttttgaaacgCTGCCTGCTCTCGAGGTTCGCTCCGACTCCGGTCGTGCTGTGAAGCCGCTGCTATGGCTGCTGCCGACTTCCTGTGAATTTGGCCGATATCCAGCTGGCAAACTTGCTCATCTGTCCTGTAATCTGAGGTGGCTTGGCTTCTCTGTCAGGACTCAGTGCTCTGTACTTTAAGGAGATAACTCGTTCATCTGTCTTCTGCATTTTACTTCACCCGCATTAAGGAACTGGTTAGACGTGATGCTCTTATTCCCTCGTGGCAGGGAAGTCCCCTCCCAGCTTCACTGATTTTCTGTTTGCCGTGAGCAGAATGAAGCCACATGTCCGTATGTAAGCACTCGGCCTACTTTGGAAGTATCTTCTGCTGTTCGTCAACAGCGCTAAACAAACTCCAGCTCGAAGTGGCATCTATAGAAACCaggagaaaaggaaatgatTATGCAACACTGGTTAGTCCAGTTCAAGCAGGAATAATAGAAacaatccttttctttttttttctttctatcaacATGAAGGCAAATCGGAACCCCCCGCAGACTCGGTTAAGCCCCTGTGCACAGTGGCCATGTGCTCTTCCCCTGCTGCGTCATGTCAGGGGTTCTGACCGCTTGTTTGTTTCCCACGATTCCTGTCTTCAGGTGTACAGGACGCTGTCCGTCTCCTCAGGCAGGGGACTTGGGTGGCTGGTTCACAGAACGTCGAATTTCTGGCATGAAAATGCTGTTGGAGTGTTTGAACAGGAAGGAAAGATTGTGCAACTACACAAacgtgttaaaaaaaattataatagtGAAATATCCAATTACGATTGTTaggacaaaaaatataaagtttacaTAAATTGACTCCTTTATGTAGCTGTTCTTGTGTCCCTTGTTTGTCACAGTATAGATGCAAATGTTACATGTTCTTATATGAAGCATGCAGCTTTATATCCCTTGCCATAAATGTCCGGAGGTTACACCCGCGCACGGTTTGTCCGAACTGTGCTGTAAAATGGCACACTGTGTGCGCTGGACGACTCGGGCCAACAGAAATTACCCATCATGCCTCTGGACAGCGGAAGGATGAATGAACTGGATCGATCTACCTTGTGCTTGGACAGTGAGAAGACGACAAAGAGAATCTGGAATGCTGGCaatcatagaaaaataaacGAATACAGGACTAAACCACCGGACCTCGGCCCAGGCAGGGTGAGGCCGTGGGCCTCTGGCTCCGGGCTTAGTGTACATATTGAACATTGCCTTCCTGCGGCCAGTCTGCCATGGCCTGGCCTTCTTCTCCGATAGTGCCCGGATGCCCGGCAGTCTGCTGGGTGACAAGGaaaccaaaaagcaaaaaacagcaaaaaatttacaaaaatgtacatgaacactacttttcctta

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013954 True 2674 mRNA 0.54 2 48173372 48176981

Neighbor

gene id symbol gene type direction distance location
AMCG00013955 NA coding downstream 7710 48160674 ~ 48165662 (-)
AMCG00013948 NA coding downstream 125306 48031392 ~ 48048066 (-)
AMCG00013950 NA coding downstream 149040 48022064 ~ 48024332 (-)
AMCG00013949 NA coding downstream 159121 48005699 ~ 48014251 (-)
AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding downstream 172301 47979589 ~ 48001071 (-)
AMCG00013956 NA coding upstream 2914 48179895 ~ 48180577 (-)
AMCG00013958 NA coding upstream 9306 48186287 ~ 48189302 (-)
AMCG00013957 NA coding upstream 25598 48202579 ~ 48212028 (-)
AMCG00013959 NA coding upstream 43251 48220232 ~ 48227111 (-)
AMCG00013965 NA coding upstream 84366 48261347 ~ 48264373 (-)
G47917 NA non-coding downstream 156534 48016561 ~ 48016838 (-)
G47839 NA non-coding downstream 478478 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 627781 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 677688 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 946118 47225801 ~ 47227254 (-)
G47991 NA non-coding upstream 2286 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 38894 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 92363 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 99755 48276736 ~ 48277321 (-)
G48044 NA non-coding upstream 131583 48308564 ~ 48344493 (-)
G47896 NA other downstream 198457 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 304509 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 972475 47188595 ~ 47200897 (-)
G47666 NA other downstream 1298002 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1862254 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 189062 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 278922 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 641002 48817983 ~ 48821156 (-)
G48373 NA other upstream 1307519 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1317746 49494727 ~ 49498630 (-)

Expression


Co-expression Network