AMCG00013959


Basic Information

Item Value
gene id AMCG00013959
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48220232 ~ 48227111 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013959
ATGGGCAAACTACTGCTGGTGTCGGTCCTGGCCGCATTGCTGCACGTGCAGCTGGGGTCCTCCTACATACTGTCCTGCTACTTCACCAACTGGGCGCAGTACCGACCCCCACCCACAGTGTACATGCCCACCAACATCGACCCCTGCCTGTGTACCCACCTCCTGTACGCCTTCGCCACCATGAAGAACAACCGCCTGTCCACCTACGAGTGGAACGACGTGCAGCTGTACAGCGAGTTCAACGCCCTCAAGAACCAGAACGGAAACCTGAAAACCCTGCTGTCTGTCGGCGGTTGGAACTTTGGATCCACGGGCTTCAGCAACATGGTGGCCCAGGCAGGGACCCGTCAGATCTTCATCGACTCCGTCATCACCTTCCTGAGGCAGTACGAGTTTGACGGTCTGGACATCGACTGGGAGTACCCTGCCAACAGGGGCAGCCCTCCCCAGGACCAGCAGCTCTACTCGGAGATGCGTGCTGCTTTTGAGAAGGAAGCGAAGGAGACAAACAGAGCCCGTCTGCTGATGTCAGCAGCTGTGTCCTCCGGCGTCGGGACCATCCAGTCCGCCTACGAGATCCCCAAACTGGGCCAGGCTCTGGACATGATCAACGTGATGACCTATGACATGCATGGGTCCTGGGAGACCTTCACCGGAGAGAACAGCCCTCTGTACAGGGGCCCTGAGGACCAGGGGGGGGACATCTACTTCAACATCGATTACTCCATGAACTACTGGAAGAACAACGGCGCCCCTGCTGAGAAGCTGCTGGTTGGCTTCCCCACCTACGGCCAGACCTTCACCCTGAGGGACGCTGCGGAACACGGGGTTGGCGCCCCCATTGCTGGCGCTGGTGCCCCAGGGAAGTACACGCAGGAGGCTGGGGAGCTGGCTTACTTTGAGATCTGCGGCTTTCTGCAAGGGGCGACATACGTGTGGAATGCAGTGCAGGACGTCCCCTACGCCTACAAGGGAAGCCAGTGGGTTGGATTTGACAACATCAGGAGTTTTGGGATCAAGGTTCAGTGGCTGATGAAGAACAACTTCGGAGGAGCCATGGTGTGGACCCTTGACATGGATGACTACCTGGGGACCTTCTGCAACCAGGGGAATACAAAGAGGGGCAATGACTTCTgtcctttttcccccctcccagTCTGCAAACCCCCTGcaacccccctgccccccatcAAGGGAGTTTCCACCACTGCAGCCAGCTCCGGGGGCAGCTCAGGGGGAGGCAGCTCCAGTGGAGGCAGCTCGGGCAGCGGCACTAGTGGCATGAACAGCAGCTTCTGCATGGGCAAGGCCAATGGCATGTACCCCGACCCCACCAACAAGAACCAGTTCTACGAGTGCACCAGCGGCAAAACCTACTTCCAGAACTGTGCCCAGGGCCTGGTGGTGATGTGGTTGAGTGAGAAAGCAGCCGAGAGAGAACGAGCAATCAGCCACAAGCCATGCTGA

Function

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013959 True 1467 mRNA 0.59 12 48220232 48227111

Neighbor

gene id symbol gene type direction distance location
AMCG00013957 NA coding downstream 8204 48202579 ~ 48212028 (-)
AMCG00013958 NA coding downstream 30930 48186287 ~ 48189302 (-)
AMCG00013956 NA coding downstream 39655 48179895 ~ 48180577 (-)
AMCG00013954 NA coding downstream 43251 48173372 ~ 48176981 (-)
AMCG00013955 NA coding downstream 54570 48160674 ~ 48165662 (-)
AMCG00013965 NA coding upstream 34236 48261347 ~ 48264373 (-)
AMCG00013966 NA coding upstream 201792 48428903 ~ 48439128 (-)
AMCG00013972 NA coding upstream 289822 48516933 ~ 48520737 (-)
AMCG00013973 NA coding upstream 295439 48522550 ~ 48524089 (-)
AMCG00013974 rbm15,LOC102786942 coding upstream 358520 48585631 ~ 48588321 (-)
G47995 NA non-coding downstream 4023 48215875 ~ 48216209 (-)
G47991 NA non-coding downstream 40547 48179267 ~ 48179685 (-)
G47917 NA non-coding downstream 203394 48016561 ~ 48016838 (-)
G47839 NA non-coding downstream 525338 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 674641 47540563 ~ 47545591 (-)
G48021 NA non-coding upstream 42233 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 49625 48276736 ~ 48277321 (-)
G48044 NA non-coding upstream 81453 48308564 ~ 48344493 (-)
G48047 NA non-coding upstream 102607 48329718 ~ 48339610 (-)
G48082 NA non-coding upstream 234415 48461526 ~ 48498711 (-)
G47896 NA other downstream 245317 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 351369 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1019335 47188595 ~ 47200897 (-)
G47666 NA other downstream 1344862 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1909114 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 138932 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 228792 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 590872 48817983 ~ 48821156 (-)
G48373 NA other upstream 1257389 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1267616 49494727 ~ 49498630 (-)

Expression


Co-expression Network