AMCG00013961


Basic Information

Item Value
gene id AMCG00013961
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48239700 ~ 48258433 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013961
ATGGAAGAGAATGTAATCTACATCACAGCGACTGACAGGAGGCCCCCAGTGGAAGCAGCCCTGTACAACACATCTGCCAACAGTCAGCAGAGGCTCCAGGCTGAGAAATCAGTCATTTACATATCTCTGCAGAAAACCACTGCCGAGGAAGAGAGCCGTTCAGAGTGCTTGTGCCCCGTGGAGTCCAAGGCCGTGACCGCTGTGGTGGATGAGTCAGTCACCATCCAGTGCCCGTACGAAAGCACCTACACTGACCACGTGAAGTACTGGTGCCGGGGGCAGCGTCGCTCAACCTGCAGCGTGGTAGTGCAGACCGCCGGACCCGTCACCAGGGACAGGACTGTGATCAGGGAGGACAAAGTGAGAGGCGTGTTCAGCGTGACTCTGAGTGAGCTGAAGCGCCATGACCGAGGGAGGTACTGGTGTGGGATAGAAAAGAGCGGCAGGGACATCCTGACAGCCATCCATCTCGACGTCCTGCAGTCAGGTGAGGCCTCTGCATCCACTGTCGAGCCCAGCACAGCTGCTGGTCAGCGAGAATCAGAGACGCCGGGCATGTGGTCAGTGCTGCGCTGGGTCCTGTTCTGTATGATGCTGCTCTGCCCCGTGGTGCTCACCTGCTGGGAGATGGGCACTCAGTGGAGCCCCGCCCCCACCGGCTGGACAAACCTGAGCACCTGTGCTCGCTGCAGTGCGATATGGGGTCCCAAGCAGGTGAGCAGTGCGGTGAATGGCACAGTGACGATACGGTGCGGTTATCAACCAGAATACAAAGACAAGGTGAAATACTGGTGCGTGGAAAGACTGCTGTTCCTGTGCCAGCCACTGGCGAAGACTGATGGCTCTGTGACAGACAGCAGTGTTTCCCTCAGTGAGGATAAATCAAGGGGAACGCTCTCGATCACTATGAGGGATCTGAGACAAGAGGATGAGGGCTGGTACGAGTGTCGGATACAGACCACTGAAGTCTCCATTGGTTATACAGCATCTGCCGTGTACCTCAACATCGACAGAGATGCCTCCATACCAGACCTTCAGGGTCCTGAGAACATCATTGGCCAGCTAACTTCAGAAACGACAATCCACTGTCTCTACTCTAAAGACTATGAGACTCACACAAAGTACTGGTGTCAAGGAGCCAGACGAAGGAACTGCAGCATTGTTGTGAGCACCGATTCCCCACAGACTCGAGGCAGGACTTCAATCAGAGACGATCAGACCCACAGAGAGTTCACCGTCACTGTCAGCGACCTCAGAGCCGAGGACGAAGGCTGGTACTGGTATGTCCATTCTGGGTCAATATGGGGTCCAGAGCAGGTGAGCAGTGTGATTCACGGCacagtgtctgtactgtgtggaTATGATGAAGCCTACAGACAGCATATGAAGTACTGGTGTAAAGGACAATTTCAAAGTGCTTGTACAACACTGGCAAAGACTGACGGCTCTGTGACAGACGGCAGGGTTTCCCTCAGTGAGGATAAATCAAGGAGAACGCTCTCGGTCACAATGAGGGATCTGAGACCGGAGGATGAGGGCTGGTACTGGTGTGGGATATCAAGACCAGGAAGTGATGATGGTGCTGCTGTGTACGTCAACATCAACAGAGGAAGTCCAGAGCCCCTCAATGCGAGATGGTggagtacagcacagtgtccTCTGAGGGCGGCCGGGGAGAGAAGCTGA
>TU59915
ACAAGctatagtgtgtgtatacaggCACTACCGACACTTCCCACTACAAACAATGCCTTACTGTGCCATGGAGGTGCATGTGGCACCAACAGCAAGACACCCATCTTCAGAAGGGGAAggaaatggaataaaaaaagaaactgcagacaagaGCAGCTGACTCGTCTGCCTCCCTCAGATCCTTTTGTCTTCCTCCATGATGAATCTCCTCCTGGTTGTGGCTCTTCTGTCAGGTGCTCGCTGCAGTGCGATATGGGGTCCCAAGCAGGTGAGCAGTGCGGTGAATGGCACAGTGACGATACGGTGCGGTTATCAACCAGAATACAAAGACAAGGTGAAATACTGGTGCGTGGAAAGACTGCTGTTCCTGTGCCAGCCACTGGCGAAGACTGATGGCTCTGTGACAGACAGCAGTGTTTCCCTCAGTGAGGATAAATCAAGGGGAACGCTCTCGATCACTATGAGGGATCTGAGACAAGAGGATGAGGGCTGGTACGAGTGTCGGATACAGACCACTGAAGTCTCCATTGGTTATACAGCATCTGCCGTGTACCTCAACATCGACAGAGATGCCTCCATACCAGACCTTCAGGGTCCTGAGAACATCATTGGCCAGCTAACTTCAGAAACGACAATCCACTGTCTCTACTCTAAAGACTATGAGACTCACACAAAGTACTGGTGTCAAGGAGCCAGACGAAGGAACTGCAGCATTGTTGTGAGCACCGATTCCCCACAGACTCGAGGCAGGACTTCAATCAGAGACGATCAGACCCACAGAGAGTTCACCGTCACTGTCAGCGACCTCAGAGCCGAGGACGAAGGCTGGTACTGGTGTGGAATTAAGAGAACCTTNN
>TU59923
GTCAGCTGACAGGGCGGCTGAGCGGAGGGGGTCGGTGCTGAGGGGAGATGGGGGTCAGCTGAGCTACAGGAAGCCCAGAGGGGAGGGGGTGCTCTCACAGAGGCAGTGAACCGCAGTGCAGAGACACTTCCTCCTGTGCTGGGTGTGAGGGCAAGTGCTGCGATACTCACATAGATTTACATGCGTCACTTTAATCCAGAAACAGGCAGTAGGCAGCTGATGCCTTTAGCAGCCCAGGACACGCCTGTGTTAACTGTGACCTGGCCATCGCAGCGCAGGCCTGTACAATATGAGGGCAGCCATCAGGACAGGCtcagagggaggcagggaaggGGTCCAGGCTCCAGCAGCAGAGAGCTCACTGCACCGCACAACAGGAAGGAATGAAAAAGAAGAAGTGGAAGAAAGAGAagccgcagcagcagcatcacTCTGTCTTCCTCTTAGAAGAAGAACAGACACAATGGCCTCCGCAGATCTCTCCTCTCCACCGGCGATGCAGCTCCTGATCATCATGGCGATCCTGTCAGATGTCCATTCTGGGTCAATATGGGGTCCAGAGCAGGTGAGCAGTGTGATTCACGGCacagtgtctgtactgtgtggaTATGATGAAGCCTACAGACAGCATATGAAGTACTGGTGTAAAGGACAATTTCAAAGTGCTTGTACAACACTGGCAAAGACTGACGGCTCTGTGACAGACGGCAGGGTTTCCCTCAGTGAGGATAAATCAAGGAGAACGCTCTCGGTCACAATGAGGGATCTGAGACCGGAGGATGAGGGCTGGTACTGGTGTGGGATATCAAGACCAGGAAGTGATGATGGTGCTGCTGTGTACGTCAACATCAACAGAGTATCCCATCAG

Function

GO: NA

KEGG:

id description
K13073 PIGR; polymeric immunoglobulin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013961 True 1686 mRNA 0.55 8 48239700 48258433
TU59915 False 857 TUCP 0.51 3 48248067 48249713
TU59923 False 868 TUCP 0.54 3 48254294 48255821

Neighbor

gene id symbol gene type direction distance location
AMCG00013962 NA coding upstream 455 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 5473 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 81455 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 95783 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 142617 48085959 ~ 48097083 (+)
AMCG00013963 NA coding downstream 159824 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 232111 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 244736 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 288821 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 337170 48595603 ~ 48598036 (+)
G47983 NA non-coding upstream 32997 48206249 ~ 48206703 (+)
G47981 NA non-coding upstream 34881 48202526 ~ 48204819 (+)
G47980 NA non-coding upstream 37257 48200626 ~ 48202443 (+)
G47972 NA non-coding upstream 59979 48179191 ~ 48179721 (+)
G47961 NA non-coding upstream 70060 48168639 ~ 48169640 (+)
G48030 NA non-coding downstream 76124 48334557 ~ 48346350 (+)
G48055 NA non-coding downstream 127757 48386190 ~ 48386491 (+)
G48060 NA non-coding downstream 147170 48405603 ~ 48405818 (+)
G48062 NA non-coding downstream 149050 48407483 ~ 48408809 (+)
G48073 NA non-coding downstream 197488 48455921 ~ 48456880 (+)
AMCG00013943 NA other upstream 419977 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1011731 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1165992 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2280506 45943571 ~ 45959194 (+)
G47398 NA other upstream 2297794 45934659 ~ 45941906 (+)
G48018 NA other downstream 10321 48268754 ~ 48269272 (+)
G48026 NA other downstream 22630 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 275453 48533886 ~ 48546200 (+)
G48142 NA other downstream 496520 48754953 ~ 48760712 (+)
G48150 NA other downstream 518064 48776497 ~ 48778459 (+)

Expression


Co-expression Network