AMCG00013963


Basic Information

Item Value
gene id AMCG00013963
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48418257 ~ 48422793 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013963
ttcctcctcacaCTCTTTCCTCATGCTGCAGTCATCCTCACAGCACTTCCTGTTTGAGTGTGGAGACACGGTTTCACAGCCCAGAGGGACAAGTGACTGCAGTGCAGGACAGTGTGGCAACGTCCGCCAAGGGACTCAGTGAGACAGACGATGGAGGCTGTGGTTCTGCTTCTCGTGTTGAGTTTAGTGCCTGATAATCTACCACTCCATCCTCCTGAATGGAGCAGCACCACCACAACATTCAAAGCCACCGCTCCTGCAACTAGCACATCCACAGCTGCTCGACAGCACGACAGCAATGGCAGTGGAAGGAGCACGAACGATGACACAGAGCACAGGTGGATCATTCCGCTGGGAGCCGCCCTGACAGTGCTGGCCCTGACTCTCATTGCAGTTTTCATGGTCGTTGCAGTGTGCAGGAGAAGGAAGGTGGAGAGAAATAAATGTGGAACAGCAGAGTGCGAGCCGTCTGCAAGCTTATCCCCGGACTCCTCTTGTACAGAGTTACACAACATCACCTACAGCACTGTGGTGTTCAATCCAAACCCATCGAATGAACCCCTGGAAATCTACGCCAACCTAAGAACATGGAGCCCCCCAGAGAGCCCACCCAGAAACGCCAGCAACCCACAATCTGCCGACACAGTGGAATACTCCACCGTGGCCATCAGGAACAAATAGCAAGCCGGGTGAAGACAGGTTGTGTGTCTGAGGGTGTCGGTCAGGTCCAGGATTGAGAGACATTCCAAGGTTATCCACAGCCCTCACTGTAGCATTTCAGTGAAAATCAGAAACCACCACCGATACTGTACAGCTCAGTGAAACAGGCTGTCCTGGTGGTCTTACTGtaactttaaaagtaaataaactgtACTGTGTCAAAGTTGGGTAATGCTGTATTATGATTTTgtcaaaagtaatacaattaaaccaTGTTTTACTCCTCTGGGGATCCAGATTTGAGTTTATTCCAATGTTGTATCCAGGCAGCTTGTTTAAAGACCGCCGAACAGAAAGTGTGAAGGGGTGTGTCAGCTTGCTGTACCGCAGTATAACAGTACACATGAGCAGGGCACCCAAACTGAAGTCTTCGGGAATATGTATTGGGAATTTCACTTAGTTTCTCACGTGGAAACCTTGCTAACATTTCTTTAGAAGGTAAAAATTTAAATGATGGAATATTCTAAAAAATATCCAACACAAACAATATCATGGATATGGATGTACAAAACTTGATGTTGACTGCAAAATctgcattgtattttacagtCGACATTTAATAGTTAATGTAATCTTTATGCACccaattaaaaactattttgttgGTGTAGGCTGattgttatttgtatacattattccATATTTTTGTAACTTAAAGTTTCTAAAAAATGTCTGCAAGATTTCCACTTCATAGGCTGACAAgattttcaaaagtagaaaccgggacataaaaaatatttataaaacaaattacatctcATAAgttaatttccagatatctgcTCCGTTTCATctactttcctttctttttcgtATGAAATGTGTATGACTTTATCATTGTGTCCTGGATAACCTCCACATCagcttaatcaattacaattagCCATAcgtgtctgctaaat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013963 True 1622 mRNA 0.44 5 48418257 48422793

Neighbor

gene id symbol gene type direction distance location
AMCG00013962 NA coding upstream 179012 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 184030 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 260012 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 274340 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 321174 48085959 ~ 48097083 (+)
AMCG00013969 NA coding downstream 67751 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 80376 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 124461 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 172810 48595603 ~ 48598036 (+)
AMCG00013975 NA coding downstream 188849 48611642 ~ 48616152 (+)
G48062 NA non-coding upstream 9448 48407483 ~ 48408809 (+)
G48060 NA non-coding upstream 12439 48405603 ~ 48405818 (+)
G48055 NA non-coding upstream 31766 48386190 ~ 48386491 (+)
G48030 NA non-coding upstream 71907 48334557 ~ 48346350 (+)
G48007 NA non-coding upstream 165112 48252779 ~ 48253145 (+)
G48073 NA non-coding downstream 33128 48455921 ~ 48456880 (+)
G48074 NA non-coding downstream 49587 48472380 ~ 48475448 (+)
G48075 NA non-coding downstream 70252 48493045 ~ 48494039 (+)
G48091 NA non-coding downstream 83078 48505871 ~ 48506198 (+)
G48093 NA non-coding downstream 91899 48514692 ~ 48514910 (+)
G48026 NA other upstream 66972 48281063 ~ 48351285 (+)
G48018 NA other upstream 148985 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 159824 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 598534 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1190288 47219919 ~ 47227969 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 111093 48533886 ~ 48546200 (+)
G48142 NA other downstream 332160 48754953 ~ 48760712 (+)
G48150 NA other downstream 353704 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 398457 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 591836 49014629 ~ 49095546 (+)

Expression


Co-expression Network