AMCG00013967


Basic Information

Item Value
gene id AMCG00013967
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48455903 ~ 48479577 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013967
ATGGCATTTGCAAAAACAAGCGAGTACTTTCAGAGGAGCTCTGGCTGCAACACTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAAGGAGCTCTGGCTGCAACATTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAGTTGCCGGCATTGTGGACACCAACCAGATTTTCTGTCTGAGTGAGAGTGAGGCTAGTTTCATGTACTACATGGAGGCTGATGGCATCCTGGGTCTGGCCTTCCCCTCCATCGCTTCCTCTGGGGCTACCCCCGTCTTCGACAACATGATGAACCAGGGCCTGGTCTCTCAAGACCTCTTCTCCATCTACCTGAGCGGACTACTCACACATTTCCCCGGATGGTACTTCTCAACACAGCTGGCATACTTTGGAGTCATCTCCATCGGAACCCCCCCACAGTCCTTCAAGGTCTTCTTCGACACTGGCTCCTCCAACCTGTGGGTGCCCTCCGTCTACTGTAACAGTGCTGCCTGCGCAGAAAGCTCATTGAGTCCAGCGCAGCGGGCCGGCAGCGTCCTGACCCTCGGCGGTATCGACCCCTCTTACTACAGCGGCCAGATCAACTGGATCCCCCTGTCCTCCGAGACCTACTGGCAGATTTCCATGGACAAGGTCACCATCAATGGGAACCTTGTGGCCTGCTCTGGCGGCTGCCAGGCTATCGTGGACAGCGGTACCTCTCTGGTTGTTGGGCCAAATAGTGACATCAGCAACATCAATGCTTGGGCCCAGGTGAACTGCAACAATATTGGAAACATGCCCAGTGTGGTTTTCACCATCAACGGGATTGACTTCCCCCTGCCCTCCTCTGCCTACGTATTCCAGAGAAGCAGCGGCTGCTCCACTGGCTTCGGCAATGGCGGCAGTCAGCTCTGGATCCTGGGAGATGTCTTCATCAGGGAGTACTACTCCGTCTTTGACAGGAGCAACAACATGGTGGGACTGGCCCAGGCCGTCTGA
>TU60040
NNNACACTCAATGGATACAACTTTGCTCTCCCTCCATCTGCCTATGTATTCCagAGGAGCTCTGGCTGCAACATTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAGTGGGTCTGGCCAAGGCTATTTAAAGTGCCCTTCTTCTGGGGTCAGAGAACAGCTGTTCCAGAATCACTTTCAATCACTTTCTCATCCTTCATGAAAACACTTGGATTCCCACAAAATTCCcctgtaaataataattttctttgtacattttgccaatagcaattgcattttcaaagacttctCCCACTTTAtggtggactttattcaaatgataaTGCAATTGTCTCTTTGAAAATATGTCTTAGCTCTTACGCCATTTACGGGACGACatgtaaatgcaaatgtcaaACGCTATTGCAAATACATGATTATGCTCTACTGACCTCTAACCTTTGACCTCTGAACTTTTGTGCACCAACCCACACGCTCACACAGGACTTGAAGCGCTGCCATTGGTCAGCGGTCTCTGTTCCCTGCTCTCTGTTCTGTTCAAGTGCAATCCCGGAAATCAGGTGGCTTGtggaattatgattattttgaatgtgatgcatttaatgaaaaaaaatataaaaaattaatacatatgatGACACTATTGACTGTAAACACTTTACAGGGAAGTACACTGGAGATGCACTGTATAGAGCTACAAGTGtaggtcctgtaggctaattGTATTTCCCGAACAAGACGTACTTGTTAATACAGAACGCAATAATGTCAGCTTTTGTGACAAATCACTTTTGACATTCATCTCATGAACACTTCCGAGTTCTGTCACCAGATGTCTCCCTTGCCCTTCAGAAGCCATGTCCAGATCTCCGCTCCTTATCATTCATTGATTAATTATCTCCACTTGTTCCTTAGCCCTTTATAGCCCTTTGTTGCATTCCCTCCTTGTGATGTATTGTCTGCCATTTAGCTGCATTACCAAGCCTTAGTCATTGTTGTATCTTGTCTACTCTTGTTTTGACCTAAGCCTGCCTCTTGTTACCTAGAGTCTCCTTTCAAGGATCCTGTGTCTGCACCTGAATCCCCATCCCAGCTGTAATCCCCAGTACAccacagatacacagagagcTTAACTCTCATTAATTGCACCTGTATTTACTAAGTTTTAATGAGAATATAAAGAGAAGTTTCTTAGCAAATTGCACATGGTGTGCCATTCAGTCATCACCCCTGATTCCCCTGTTTACCCTTCCCACCTCTCTCCTGTTTCCTGTACTCATCAATCCTTGTATATATACTCCTTTGTTCTGTTCACAGGATGCAAAGTCTTGTTTGACCTCACCGCAGCATTACTGAGCAGACTTTCCTACTGTACTCTGTTTTCCTGTGTTTCAACCTTCTCTTTGTCCTACATCTCCAGATCTTCCTAGTTTGCCTGGTTTGCCCGATCGATAGACCTTCCTTCTTTGACCCCGACTATACCTTTTGCCTAGTCCTCTTTGTTCTGCCTGCTAAACTCCTGTTCCACAGTCTGTTTCCAGACTTTCACTCTGCGACTGCAATTGGATTGAATTCTGACCAAGAGAGCTGAGTTTTAAgtaatttttctgtttttatcagGTAAGCCCCAGGAGGGCTCTGTTTCTGGTGCACCTGATTGGAAAtatgactgactgaatgactggtTCATGTTATCATCTTAAATCTAGATTCCCTGCCATTACATATGTTTGACAAAGATAACCCAATAACCCGGAATACTGAACTGATCTTGATTTGAAAGTCATTACCTGAAATAAAGATTAATGTTGGGTAGCTATTATATGTTTCACTATCAGTGCACTGAAGTGATTGAAATGAACATGATTGAAAACTGAAGTGATTTAagtttgataaaataaatgggTTGTAATCactcaaaaaattaaaaaagttaattcgCCTCAAATTTTCTTTGATGTGTACTGATTTGCCACTTTAAGTTTACAGTGCTCAATCACTTCAATTAATTTTTCTGTCTGACATCACGCACGTGCGTATGTGCTCCATCTCCACCAAGCCCGCGAATTCTGCCATTTTTGCTCTGCTTGCCTCAGAAAAGTATGCAGAGAAAGGTTTGCAGGTACAAATTAGTTACAgagcatccggaaagtattcacagcgcttcacttttttcacattttgttatattacagccttattccaaaattgattaaat

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013967 False 1095 mRNA 0.55 10 48455903 48479577
TU60040 True 2276 lncRNA 0.41 2 48470333 48472932

Neighbor

gene id symbol gene type direction distance location
AMCG00013966 NA coding downstream 16775 48428903 ~ 48439128 (-)
AMCG00013965 NA coding downstream 191530 48261347 ~ 48264373 (-)
AMCG00013959 NA coding downstream 228792 48220232 ~ 48227111 (-)
AMCG00013957 NA coding downstream 243875 48202579 ~ 48212028 (-)
AMCG00013958 NA coding downstream 266601 48186287 ~ 48189302 (-)
AMCG00013972 NA coding upstream 37356 48516933 ~ 48520737 (-)
AMCG00013973 NA coding upstream 42973 48522550 ~ 48524089 (-)
AMCG00013974 rbm15,LOC102786942 coding upstream 106054 48585631 ~ 48588321 (-)
AMCG00013976 NA coding upstream 171712 48651289 ~ 48663453 (-)
AMCG00013979 LOC106565664 coding upstream 266316 48745893 ~ 48754827 (-)
G48044 NA non-coding downstream 111410 48308564 ~ 48344493 (-)
G48047 NA non-coding downstream 116293 48329718 ~ 48339610 (-)
G48025 NA non-coding downstream 178582 48276736 ~ 48277321 (-)
G48021 NA non-coding downstream 185339 48269344 ~ 48270564 (-)
G47995 NA non-coding downstream 239694 48215875 ~ 48216209 (-)
G48092 NA non-coding upstream 26294 48505871 ~ 48506136 (-)
G48106 NA non-coding upstream 65660 48545237 ~ 48546275 (-)
G48175 NA non-coding upstream 165613 48645190 ~ 48651229 (-)
G48275 NA non-coding upstream 547707 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 874115 49353692 ~ 49354535 (-)
AMCG00013964 NA other downstream 80807 48366043 ~ 48375096 (-)
G47896 NA other downstream 480988 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 587040 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1255006 47188595 ~ 47200897 (-)
G47666 NA other downstream 1580533 46871869 ~ 46875370 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 338406 48817983 ~ 48821156 (-)
G48373 NA other upstream 1004923 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1015150 49494727 ~ 49498630 (-)
G48506 NA other upstream 1240188 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 1242169 49721746 ~ 49724237 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1605002 txndc16 non-coding NC_048583.1 CM023237.2 24255245 ~ 24256435 (-)