AMCG00013968 (slc16a4,LOC106572850,LOC107591855)


Basic Information

Item Value
gene id AMCG00013968
gene name slc16a4,LOC106572850,LOC107591855
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48547254 ~ 48572929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013968
CGGGGCGGTGCGGGGCGGGCGTGCGGGACTCCCTCCAGCCGGCACTGCAAAGTTTGGACATCACGTGTCCGCCCGAGCAAGGCGCCCCTGGGCTTTTCTCGCCCCTGATTATTATTCCTGAATGGTGCTGCAGCAGACCGGCCGTCGGCGGCCCGCTCCCTGCCCGAGAGACGGCGTGCATCTCCGCGGCTTTCTGTCTGTCCGTCGTCATTTCTCAAATCCAGCCTCGGAGACGTATTCGCGATGACTGCGGGGGTACCGGTGCGCTGCCGGGGCTGCTGTCCGGACTCCTGACGGGACTCCTGACGGGCGGGAGGAGCACGTTGATTATATATGAGACTCTGTGGAAGAGGACATCACAGTCCGGGGACAGTTGGCTGAACGTCGGTCCTTCTATTCTACCccccattcattcattcattcgtttGTTTAAATTAAGCTGGACGAAGATATATGTACGACTGAAGTGATATTGGAAGCGATTTCTGTTTTCCCAGAGAATGcaCACTTGTGCAGGGCCGCTATGCCGTTGGCGACGCACACACTCCTGCCTGTTCACACCCGCTCCTGGCTACAGAATACAGACCACCTCACTTCCAGCTCACAGACCACCAGGAATGAGAACATAGCAGCCTGGTTCTGATCCGCGATTCGAGACCCACAGTCCCACTATGCTCCTCAAAGAGCACAACAGCGAAGGCAAGCCCGCCAAGATGGTCATCTGCGAGAAGAAGGTGGCGAAGAAGGAGGAGACACCTCGGTACGTCGACCCCCCTGATGGCGGCTGGGGCTGGATGATCGTGCTGCACTGCTTTCTGGTCAACATCCTGGTGATGGGCACGCTCAAGACCTTTGGCATCTTCTTCGTGGCATTCCAGGACGCGTTCGGCGGCTCCTCGGAGCAGATCAGCTGGATCGGCTCCATCATGTCCAGTCTGCGGCTCTCGGCTGGTCCGCTGGCATCCGTGGCCTGTGGCAAGTTGGGCAACCGCGTGACGTCCATTGTTGGGGCAGTGCTGGTCAGCGCTGGCTTCCTCATGAGCATCCTGGCCACCAGCGTGATCTTCCTGTACGTCAGCATGGGCGTGATCGTGGgGATCGGCTTCGCCCTCCTGTACCAGGCCACCTCCGTTGCCACGGCCACGTATTTCAGAAAGAGGCTGGCGACGGCCTACTCCATCGGCCGCTCTGGGATGGGCCTGACCTTTGCTCTGGCCCCCTTCACACAGCTGCTTCTGGAGAGCTACGGCTGGCAAGGAGCGCTGCTGATCCTGGGGGGGCTCATGTTGAACCTGGTTGCCTCTGGGATGCTGCTGAGACCCATACATGTTAAGGGCACCGAGCCAGACCCCGCCCTGCAGGATCACACCAACAAACCCCCGGGACCCGAGAAAGCTCCACTGTCCTTCCAGAATGGCCTGAACGGGGGGGGCCCATTGACGAATGGAGGCCCCATCTCCGACCCCCACTCAGGCACCCACCAGGAGATCCCCCTCCAGAATGGTGCATTGCAGAATGGGCACGAGAAGCATAGCCCCGCCACGGGGAAGGGGCCCATCCCCTCCAATGAAGCTCAGTTCTTCCTGAAGCAGAATGGCCAGGCTCCGGCGAGCGAGGATGTGTCCACGGTCTCCAAGCTGCTGGACTTCTCTCTCCTGAAGGACCCTTTCTTCTGCATCTTCACATGGTCACTGGTCTTCAGCCAGCTGGCCTACTTTATCCCCTATTTCCACCTGTCCGCCCGGGCCAGGATCCTCGGCATTGACCCCATGGATGCGTCCTTCATCATCTCGGTCGCCGGCATCACCGAGACAGTGGCCCAGCTGGTATCGGGCTGGGTGGCTGACAGGAACCTGATCCACAAGTACCACTACCACAAGGCCTACCTGATCCTGTGTGGGGTCGTCAACCTGCTGTCCCCTCTGGCCACCACCTACATCCAGCTCATGATCTATGCCATCTTCTTCGCTATCTTCTGCGGGGGCTACATGGCGCTGCTGCTGCCTGTCTTGGTAGACCTGGTTGGGGTGGAAAGGCTGAACAACTCGATGGGCTTCTCCATGTTCTTTGTGGGGATCGGCTGCCTCACGGGACCCCCGACTGCAGGCCTGCTGTATGACTACACCCGCACCTACGACTGCTCCTTTTACCTGGCCGGCGTGTGCTACCTGCTGTCCTCCGTGTCCCTCTTCCTGGAGCCACTGGCCCGTCGCTGGACGAAGATGAGGAGGCCGGAGGGACGGACCGGAGAGACGACGGGCCGCCAGATCAACGGCCGTGTCGTGTTGGACAGCGTGCGGAAGGGGGTGGTCTAGGAGCGCTGGCGGGGCGGGACCAGGCTGGGTCGGATGTCCCGTGCGATATCTCCCCTGGGGGTGCTGAACACTGGAAGCCACGCATCGCCGGGGTGTTGTCGTTGACTACCCCAGCCTCCGGCTCGTCTGCCGGGAtggaggtcaaaggtcaaccACTGGTTCGATGGACCTTTGAGGTGCATCAGAAACCCAGCCTTTGCACAAACAATACACTAATGCAACTCAGTGAGGCGGGTCTCTGAGAACCGAAAGGAAAGGACACCTCCTCTCTCTCAAGGCAAGAGACTTGTCATAGCCAGCAGAAGAGAGGAACGAAATCCGATTCTGTAATGTTTGAATATGAGCCAAATGAGCACTTTTGTTGCACATGTTATAAacgttattattttattttccttctttttaaaaCTGACTCTTTCTGATCACTGCAGCTCTCTGCAGTCCTCAAACCACATGGGGGTGGGTCTAGAACCCAGAGCTGCGGGACACAGACCCCCCTGTGGGCCTGAGACGCGCCCGTGTGCAACACTGCTGCGCCTCATAATCAAACCCATACCAGGAATGCAGAGCGTCAGAAGAACACGTGTTCCTCTTCCCAATCCCCGCAGTTCGTCCCTCTCATTGTTACAGTCCGCCATGATCTCAGCCTCCAGGCACGGCTCCCCTGCCGTCTTCACAGCCATTCCCCTCAGTCAAGGGCCCAAGAGCTGGGTGCCACCGTGTCCGCTGGCTGTGGGGGGGGCTCAGAGTCACTATTATTCACTTTCATTGCCATGTTTTTACATGAACCAATACAAccacagcaaataaataaatagtctttGAATTTACATATGGAGAGGAAAttggggatttttttaaaatattatataaatataaaatatacttcTTTATATTCAGATCAggatattgaaataaaat

Function

symbol description
slc16a4 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A4 (solute carrier family 16 member 4).

NR:

description
PREDICTED: monocarboxylate transporter 5-like isoform X1

GO: NA

KEGG:

id description
K08181 SLC16A4; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013968 True 3236 mRNA 0.57 11 48547254 48572929

Neighbor

gene id symbol gene type direction distance location
AMCG00013970 NA coding upstream 42643 48503169 ~ 48504611 (+)
AMCG00013969 NA coding upstream 52942 48490544 ~ 48494312 (+)
AMCG00013963 NA coding upstream 124461 48418257 ~ 48422793 (+)
AMCG00013962 NA coding upstream 308009 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 313027 48227415 ~ 48234227 (+)
AMCG00013977 NA coding downstream 22674 48595603 ~ 48598036 (+)
AMCG00013975 NA coding downstream 38713 48611642 ~ 48616152 (+)
AMCG00013978 NA coding downstream 142441 48715370 ~ 48726258 (+)
AMCG00013989 NA coding downstream 215544 48788473 ~ 48790311 (+)
AMCG00013983 psma5 coding downstream 241837 48814766 ~ 48816208 (+)
G48093 NA non-coding upstream 32344 48514692 ~ 48514910 (+)
G48091 NA non-coding upstream 41056 48505871 ~ 48506198 (+)
G48075 NA non-coding upstream 53215 48493045 ~ 48494039 (+)
G48074 NA non-coding upstream 71806 48472380 ~ 48475448 (+)
G48073 NA non-coding upstream 90374 48455921 ~ 48456880 (+)
G48121 NA non-coding downstream 7042 48579971 ~ 48620338 (+)
G48134 strip1 non-coding downstream 113038 48685967 ~ 48746141 (+)
G48155 NA non-coding downstream 219058 48791987 ~ 48795514 (+)
G48167 NA non-coding downstream 249772 48822701 ~ 48823613 (+)
G48171 NA non-coding downstream 273135 48846064 ~ 48851011 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other upstream 1054 48533886 ~ 48546200 (+)
G48026 NA other upstream 195969 48281063 ~ 48351285 (+)
G48018 NA other upstream 277982 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 288821 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 727531 47752214 ~ 47819723 (+)
G48142 NA other downstream 182024 48754953 ~ 48760712 (+)
G48150 NA other downstream 203568 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 248321 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 441700 49014629 ~ 49095546 (+)
G48231 NA other downstream 503813 49076742 ~ 49100458 (+)

Expression


Co-expression Network