AMCG00013972


Basic Information

Item Value
gene id AMCG00013972
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48516933 ~ 48520737 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013972
CAGCACAGTTGGATCCAGCAGCCAGAGGCAGACGTTGGAGAATCGAGTGGCTGACAGACAACAGGATGAAGTGGGCAGTTGTGTTGCTGGGCCTGGTGGCCCTGTCCGAGTGCATCACCAAGGTGCCTCTGATTAAGGGGAAGTCCATGAGGCAGGCGCTGATGGAAAAGGGCCTCCTGGAGGAATTCCTGCAGAAGTATCCCTCTGACCCGGCTGCCAAGTACTCCCTGTACAGCAGCGCCTCCAACCTGCCGATGTACAACTACATGGATattGAATACGTTGCTGTCATCTCCATCGGAACCCCCCCACAGTCTTTCAAGGTTCTCCCTGACACCGGCTCTGCCAACCTGTGGGTGCCCTCCATCTACTGCAACAGCTACGCCTGCTctaaCCATCAGAAATTCAACCCTGGCCAGTCCTCCACCTTCCGCTCCCTCAACACTCCCGTGTCCATCGCCTATGGCACCGGCAGCATGACTGGCTTCCTGGGCTATGACACCGTCAATATTGGAAGCATCATCGACACGAACCAGATGTTTGGCCTGAGCGAGACCGAGCCGGGCAGTTTCCTGTACTACAGCCCCTTCGATGGCATCATGGGTCTGGCCTACCCCAGCATCTCTGCTTCTCAGTCCACCCCTGTGTTTGACAATATGATGAACGAGGGGCTGGTGCCACAGGACCTCTTCTCCATCTACTTGACCCGTGGTGGTGCTCAGGGCAGTGTTGTGACTTTCGGAGGATTTGATTCTGCTTACTATACTGGACAGATCAACTGGATCCCAGTCACGAGACAGGGCTACTGGCAGATTTCCATTCAGAATGTCATGGTCAATGGGCAGGTGGTGGCCTGTGCCCAGGGCTGCCAGGGCATTGTAGATTCTGGAACCTCCCTGATCGCTGGGCCTCAGTCCGACATCACCATCATCCAGCAACAGATTGGTGCCACCATGACCAGCAACAGCCAGTACTCCATCAACTGCCAGAACATGGGCAACATGCCTGAGGTTGTCTTCACCATCAATGGCATTCAGTACACTCTGCCTCCCTCCGCCTACGTCAGACAGCTGAACGGCGCTTGCTCCAGTGGCTTCCAGTCCATGAACTTGGGTGGTCTCTGGATCCTGGGAGATGTCTTCATCAGGGAGTACTTTGCCATCTTTGACAGAGGCAACAACATGGTGGGGCTGGCCCAGGCCATCTGAAGTGGACTTCCTTTTCCTGGGGAACGCGTCTCCTGAGTGCAACAATATCCTGTCCCATTCTGGGATCACCGAGAGCTGGGGGACTTGCTCCTCCTCTGTCTGCATTTTTTTACACTTCAGAGATTCTAGTGTAAAAAATCTTAACAACACCACAACCACCAACCCCATTTGAGGAGTGTCTCTGGAATGTAAGGCCAACTTGTTGACAATTCAAATAGAGCAGATTGTCTCAAAATTACCCAATTTTTTTCTTACCACTATCCACTCTTTCTTCCCATCACCTTtctgcaataaaatgtaaaaataaa

Function

GO: NA

KEGG:

id description
K06002 PGA; pepsin A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013972 True 1516 mRNA 0.53 9 48516933 48520737

Neighbor

gene id symbol gene type direction distance location
AMCG00013966 NA coding downstream 77805 48428903 ~ 48439128 (-)
AMCG00013965 NA coding downstream 252560 48261347 ~ 48264373 (-)
AMCG00013959 NA coding downstream 289822 48220232 ~ 48227111 (-)
AMCG00013957 NA coding downstream 304905 48202579 ~ 48212028 (-)
AMCG00013958 NA coding downstream 327631 48186287 ~ 48189302 (-)
AMCG00013973 NA coding upstream 1813 48522550 ~ 48524089 (-)
AMCG00013974 rbm15,LOC102786942 coding upstream 64894 48585631 ~ 48588321 (-)
AMCG00013976 NA coding upstream 130552 48651289 ~ 48663453 (-)
AMCG00013979 LOC106565664 coding upstream 225156 48745893 ~ 48754827 (-)
AMCG00013980 LOC100690806,LOC102789655 coding upstream 236849 48757586 ~ 48776138 (-)
G48092 NA non-coding downstream 10797 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 18222 48461526 ~ 48498711 (-)
G48086 NA non-coding downstream 32623 48479448 ~ 48484310 (-)
G48044 NA non-coding downstream 172440 48308564 ~ 48344493 (-)
G48047 NA non-coding downstream 177323 48329718 ~ 48339610 (-)
G48106 NA non-coding upstream 24500 48545237 ~ 48546275 (-)
G48175 NA non-coding upstream 124453 48645190 ~ 48651229 (-)
G48275 NA non-coding upstream 506547 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 832955 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 932296 49453033 ~ 49453872 (-)
AMCG00013967 NA other downstream 37356 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 141837 48366043 ~ 48375096 (-)
G47896 NA other downstream 542018 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 648070 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1316036 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 297246 48817983 ~ 48821156 (-)
G48373 NA other upstream 963763 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 973990 49494727 ~ 49498630 (-)
G48506 NA other upstream 1199028 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 1201009 49721746 ~ 49724237 (-)

Expression


Co-expression Network