AMCG00013985


Basic Information

Item Value
gene id AMCG00013985
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48821250 ~ 48828975 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013985
ATGGAAGCCGTGGCTCAGAAAGTCATGAGCGGGTTCTCTCTGGACGCCGGACCCCTGAAGGAGCCGCTGGGCTTCATCCGAGCCCTGGAGTGGATCTTCTCCATCTTTGCCTTTGCCACAGCGGGGGTGTTCTCAGGCAGGTCCAGCAGCATCGTCCAATGCCCCAGTGAGACCAAGGTCATCAACATCAACGCCAGCTTCGCTTACCCCTTCAGgcTGAACATGGTGGAGTACAAGGTGCCGACCTGCAACAACGGCACCCTGGTGTCACAATACCTGATAGGAGACTACTCCTCGTCCGCCGAGTTCTTCGTGAGCGTGGGCGTCTTCGCCTTCCTGTACTGCAGCGCCACGCTCGTGCTGTACCTGGGCTTCCAGAATGTGTACCGGCAGACCAGCCGCGGCCCCATCGTGGGTCTGACCGACATCAAGTTCTCCTGCAGCCCCTCCACCCTGATCAACTCCATTCAGCACTGCCAGGACCACTCGGCCAAATGCAGCTTGGGGGAGACGCCCAGCATGGGCAAGCTGAACGCCTCTGTGaTCTTCGGATTCCTTAACCTCATCCTGTGGGGGGGGAACTGCTGGTTCATCTTCAAGGAGACCGCGTGGCACAGACCCGCCAACCCCCCACCCAGCGTGGAGGGTGGAGTTGGCCAGAGCTAA
>TU60138
CGGGGCTCCCGCGCGGGTTGGGCTCCGCGAGACAGACGCCAGCGGGAGTTAATGGTCAGCCGTCTCTCCGTAGTAAACTCCGAGTAAACTGCGCGTAAACTCCGCCATGGAAGCCGTGGCTCAGAAAGTCATGAGCGGGTTCTCTCTGGACGCCGGACCCCTGAAGGAGCCGCTGGGCTTCATCCGAGCCCTGGAGTGGATCTTCTCCATCTTTGCCTTTGCCACAGCGGGGGTGTTCTCAGGCAGGTCCAGCAGCATCGTCCAATGCCCCAGTGAGACCAAGGTCATCAACATCAACGCCAGCTTCGCTTACCCCTTCAGgcTGAACATGGTGGAGTACAAGGTGCCGACCTGCAACAACGGCACCCTGGTGTCACAATACCTGATAGGAGACTACTCCTCGTCCGCCGAGTTCTTCGTGAGCGTGGGCGTCTTCGCCTTCCTGTACTGCAGCGCCACGCTCGTGCTGTACCTGGGCTTCCAGAATGTGTACCGGCAGACCAGCCGCGGCCCCATCGTGGTGAGTGTGCCGGGGGACCCCcgccttcctccctctccctccacctctctctATCCCCTCTTCAACCCCCCTCTGTCTCNN
>TU60140
TCGCGTTCCTGTGGCTGGTGTCGTCCTCGGCCTGGGCAAAGGGTCTGACCGACATCAAGTTCTCCTGCAGCCCCTCCACCCTGATCAACTCCATTCAGCACTGCCAGGACCACTCGGCCAAATGCAGCTTGGGGGAGACGCCCAGCATGGGCAAGCTGAACGCCTCTGTGaTCTTCGGATTCCTTAACCTCATCCTGTGGGGGGGGAACTGCTGGTTCATCTTCAAGGAGACCGCGTGGCACAGACCCGCCAACCCCCCACCCAGCGTGGAGGGTGGAGTTGGCCAGAGCTAATAGGATCACTCAGGCCCCGCCTCCCACCGCCTGCGGCCTATTGGCACACTTCCTGTCAGCTGGGGCGGCGAGCGGGATGACAGGATTGGCATCTCGGAGGGAAGAGAGGCGtcgtcctttttttttttttttttttttttaatgttgaattttgtttattttattcttatttttttaacacaactTTATTTTACGTTCAAACTGTTTGTTCTCCCTGTTCACACCCCGTCAATCTGTGTCACAAAACCAGACCTGTGTAGGAATAAAACCTCGGGGCTTCTCGGCTCCCACACCAAGGCCCGGCCTTGCGGCCCTGTCCTCTCCTCTGAAACGTCTGTTGCCAAATTCTTTATCGCAGAGACGCCAAGTCCGGCCTCGTTGCTGGACGGCGCTCGGTGTAGTGCCACGGGGAGGGAGGCGTAGGACGGGGAGGGGAGGGAGTTGAGGCAGGGTGTGGAAGGTGTCCACAGAGGCTTGAAGCCACACGTGTCTCGCAGGGGAACACACTCCACTCGCCACTGCGCTGTGCCGACACTATAGACACGCAGCGATGCCTGCAGACGTGTCAATTGATTGTGCGTTCATTTTTCTAGactgtttgcttgtttaatatagatgtatacatataaagatGTGGCCAATAAGGATAGCCACAGGGTGTCCTCTGAGTCTATGCCAAGTATTTTGGATGTATTTAGTTCTCCAGCCGTGTGCTGAGACAGGAGGCTACGGCTGTCTTGAGAGCGAGTGTATATTTGAAGCCATCAGTTGTAAAAAGAATAATCTGTTAACAATGAATCTGTGATGTTAAATAAGTCTAATTGTGCCTTAAATAACTTCTAGTTAGTGACTGAAAACTGTGGCCAAAACCAAAACCTCTTACAGCGAGGCGGAGTGATTGGTGAGCTGAGACTGAGAAGTGCCAAGGGGatgtggagggagagagagagaagtcagTGACTGAGACGGGCGGCCGTCATCACATTTCACACCCACCTGTGACTGGCTCACCCTGTTCTCgtttcttttgcttttgtttgcatgtgttttcCTTTGCTGCCGTCTTCTCCTCCTGAAGAGATGCGTATCTGTAGGTTAGGCATTTATGTTCTGGGGTTTGAAATGAGAATTCGCTGCAGCACCGTTGATAATAAGAGTCCGTTAGGCTTCAGATTGCTCCTAGTGCCTTAAACATGATTTCTTACTGTAGTCGTCTTTAATctgctgttgtttcttttcaatatgTCACTAGTGGGGGAATAATTTACCACTCCTCCACAAAGTCTGTTTTAAGTTATAATAGGAGGCTGGAGGCTGGGGTTGCGAAGCCaagtgtgattgtgtgattgtgattgCTTTGGGACTCCCAAAGTctgtcatttttttgtgttttttatgtgttaCTGTGCAAAGGAAAGAGGGTTTGTAAACATGACaatcattcatgtatttgtgcttctggaaaaatgggaaaaaactaaaacctagcgcttctgtgtgtctctgttgtGGTGAAATATTAAACGGGACGAGCCGATCCCACATCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013985 False 666 mRNA 0.60 6 48821356 48827425
TU60138 False 601 TUCP 0.61 4 48821250 48826055
TU60140 True 1843 lncRNA 0.49 2 48827054 48828975

Neighbor

gene id symbol gene type direction distance location
AMCG00013983 psma5 coding upstream 5042 48814766 ~ 48816208 (+)
AMCG00013989 NA coding upstream 30939 48788473 ~ 48790311 (+)
AMCG00013978 NA coding upstream 94992 48715370 ~ 48726258 (+)
AMCG00013975 NA coding upstream 205098 48611642 ~ 48616152 (+)
AMCG00013977 NA coding upstream 223214 48595603 ~ 48598036 (+)
AMCG00013984 NA coding downstream 4370 48833345 ~ 48838141 (+)
AMCG00013982 NA coding downstream 10556 48839531 ~ 48843626 (+)
AMCG00013988 NA coding downstream 57779 48886754 ~ 48888169 (+)
AMCG00013995 NA coding downstream 67827 48896802 ~ 48904030 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding downstream 79162 48908137 ~ 48913068 (+)
G48155 NA non-coding upstream 25736 48791987 ~ 48795514 (+)
G48134 strip1 non-coding upstream 75109 48685967 ~ 48746141 (+)
G48121 NA non-coding upstream 200912 48579971 ~ 48620338 (+)
G48093 NA non-coding upstream 306340 48514692 ~ 48514910 (+)
G48091 NA non-coding upstream 315052 48505871 ~ 48506198 (+)
G48171 NA non-coding downstream 17089 48846064 ~ 48851011 (+)
G48173 NA non-coding downstream 25011 48853986 ~ 48854363 (+)
G48236 NA non-coding downstream 198193 49027168 ~ 49050298 (+)
G48243 NA non-coding downstream 239130 49068105 ~ 49112083 (+)
G48353 NA non-coding downstream 624058 49453033 ~ 49453872 (+)
G48150 NA other upstream 42791 48776497 ~ 48778459 (+)
G48142 NA other upstream 60538 48754953 ~ 48760712 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other upstream 275050 48533886 ~ 48546200 (+)
G48026 NA other upstream 469965 48281063 ~ 48351285 (+)
G48018 NA other upstream 551978 48268754 ~ 48269272 (+)
G48235 LOC105889183 other downstream 185654 49014629 ~ 49095546 (+)
G48231 NA other downstream 247767 49076742 ~ 49100458 (+)
AMCG00013996 NA other downstream 516122 49345097 ~ 49348601 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 709079 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 784726 49613701 ~ 49620027 (+)

Expression


Co-expression Network