AMCG00013991 (psma5,LOC107685984,LOC107736674)


Basic Information

Item Value
gene id AMCG00013991
gene name psma5,LOC107685984,LOC107736674
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48817983 ~ 48821156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013991
ATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGCTTGTGACTTGGGGAGATGAGCCTGTGGGCCTGTTGTGCGCTGGTCTGGACGGGCAGCCCTCCGCCACTGTGGCTCTGAGCAGCCCGGCCTCTGTTCTGGGCTCTGCTGTTTCAGTGCATCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAG
>TU60179
GCGCTGTTTCTGAACCCAGTAAGACCACGTGCACGTCAGATAGAAGCAACCATGTGTTTCAGCTGAAAGTGCAAACTGTGAAAAGCAAACATGTGCAGACTGTGCCGAGCCGGCTGGACACGGAGGACAAACATCCTGCAGAGCCGGAGCTGCGCCGGGGCGACGCCATTTAAACAGTTTGGATCTGCCGCGCCGAGGCGGAACTCCTGCCACAGAGGGCGTCGTTTCCCAGCCGGACCGTTTCCTCTGACACCCCAGGGTGTCGTTTCCCCCCGGAGCGCAGGGCCTGAGACACACGCTTCCTGTCCGATCACACACAGCAAAAGCCGACTCATTGAGCCCCAGTCGGACGACCCTCTGATACCATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAGTTAAGTAGTcagttaattaatacattaaatgatggtatgttttgattttgtaacgAACATTCTGAGTTGCAAAGGTCATCTtatgtgtgaatttatttacctattaatttattttaaacgttTGTGTGGTTCATTCACTTTTGGTTTTTGTGTTCCGTGTTCTGTGACGGTGGGGGGGCAATCAGGGCTCATAGCGTGTGTAAGGACACGAGGCAGGAAAGTAGGAAATAAGGCCAGGTTTTATTCTTACAGTGTGCAAACCAACAAAGACTCCTGTTTCAGTCTTAACTAAAACATGTTGAAACATCTCCCGCTATatctaataataacaaaatacaacagcagcCAAACCAAGTCCGTAATCGTTGTCGTATGGCCATAAACAAGGTCCTGATAACCAGAGTACATCCTGTCCCGTACCCGTACTCAGACGCACTGCCAGGCTCTCCTCACTGCCTCTACGCTGCCTGGTTTTATGGAGGAGGGGAGCCAGTCACGTTGGGAACAGCGGGTCAGCTGTTCCGCTATCAGATCCCTCCCCCGGGGTCTGGGGAGGCACAGGCCAGTTCAGGGCGGGTCTGGCCTCAgtgtttatacactcacctaaaggattattaggaacacctgttcaatttctcat
>TU60180
GCGCTGTTTCTGAACCCAGTAAGACCACGTGCACGTCAGATAGAAGCAACCATGTGTTTCAGCTGAAAGTGCAAACTGTGAAAAGCAAACATGTGCAGACTGTGCCGAGCCGGCTGGACACGGAGGACAAACATCCTGCAGAGCCGGAGCTGCGCCGGGGCGACGCCATTTGAACAGTTTAAACAGTTTGGATCTGCCGCGCCGAGGCGGAACTCCTGCCACAGAGGGCGTCGTTTCCCAGCCGGACCGTTTCCTCTGACACCCCAGGGTGTCGTTTCCCCCCGGAGCGCAGGGCCTGAGACACACGCTTCCTGTCCGATCACACACAGCAAAAGCCGACTCATTGAGCCCCAGTCGGACGACCCTCTGATACCATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAGTTAAGTAGTcagttaattaatacattaaatgatggtatgttttgattttgtaacgAACATTCTGAGTTGCAAAGGTCATCTtatgtgtgaatttatttacctattaatttattttaaacgttTGTGTGGTTCATTCACTTTTGGTTTTTGTGTTCCGTGTTCTGTGACGGTGGGGGGGCAATCAGGGCTCATAGCGTGTGTAAGGACACGAGGCAGGAAAGTAGGAAATAAGGCCAGGTTTTATTCTTACAGTGTGCAAACCAACAAAGACTCCTGTTTCAGTCTTAACTAAAACATGTTGAAACATCTCCCGCTATatctaataataacaaaatacaacagcagcCAAACCAAGTCCGTAATCGTTGTCGTATGGCCATAAACAAGGTCCTGATAACCAGAGTACATCCTGTCCCGTACCCGTACTCAGACGCACTGCCAGGCTCTCCTCACTGCCTCTACGCTGCCTGGTTTTATGGAGGAGGGGAGCCAGTCACGTTGGGAACAGCGGGTCAGCTGTTCCGCTATCAGATCCCTCCCCCGGGGTCTGGGGAGGCACAGGCCAGTTCAGGGCGGGTCTGGCCTCAgtgtttatacactcacctaaaggattattaggaacacctgttcaatttctcat
>TU60181
GCGCTGTTTCTGAACCCAGTAAGACCACGTGCACGTCAGATAGAAGCAACCATGTGTTTCAGCTGAAAGTGCAAACTGTGAAAAGCAAACATGTGCAGACTGTGCCGAGCCGGCTGGACACGGAGGACAAACATCCTGCAGAGCCGGAGCTGCGCCGGGGCGACGCCAGTAATAGCGCTGCGTAAATTAACacatctaaaataaacacactgcagCTTTTATCACACGATGTGGAAGTCGAGCTCCTTCCAGTACGAACAAATGACCAAGAATACAGATAAACTGTTTGAACAGTTTAAACAGTTTGGATCTGCCGCGCCGAGGCGGAACTCCTGCCACAGAGGGCGTCGTTTCCCAGCCGGACCGTTTCCTCTGACACCCCAGGGTGTCGTTTCCCCCCGGAGCGCAGGGCCTGAGACACACGCTTCCTGTCCGATCACACACAGCAAAAGCCGACTCATTGAGCCCCAGTCGGTAAGTGCCGAGCTCCGCGCCCGGGTTTAGCGGTTGTTTCTGAGTTGTTTGTGCGTCAGATTGAACACGACGCGGGTATCGATGTACGGTTGCGCATGCGGGCTCACTTACATACTgatgttgaaaaataattgatcaGTAACGGCAGACTGGCCGCAGTGCTGTACAAAGGCATGCgattttataataattcaatGCAGATCATTTTATTTCGTGTTTTTATGATATTAAagtgattattgttgttgactTAGTCAGGCGGGGGATAAAGTGCGGATCTGGGGTAATAAACACAAGTTTCTAGCGCTGAAAGACCGTGATGGTGCAAGTCAGTCAAACTTGACCGGTACAACATGACGGACAGCAGCGCTAGCCACTAGCGTGTGGATGTGTGCTGTTTAGCCCCGCCCCTTTCTGGTTTTGTCCAATGATAGCGGTGGGCAATGCTCTTAGCTCGGCTGCGCAGCGTCAGCCCAATTGCCCCGTAAGTTTCGCTGCTGCGTGTTGTGCTGAAGTCCGGCTCTCGTCGCTGATCTGCGGGGAAAAGTCTCACTGCTCCGCTCTCTCTGTTCGCAGGACGACCCTCTGATACCATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAGTTAAGTAGTcagttaattaatacattaaatgatggtatgttttgattttgtaacgAACATTCTGAGTTGCAAAGGTCATCTtatgtgtgaatttatttacctattaatttattttaaacgttTGTGTGGTTCATTCACTTTTGGTTTTTGTGTTCCGTGTTCTGTGACGGTGGGGGGGCAATCAGGGCTCATAGCGTGTGTAAGGACACGAGGCAGGAAAGTAGGAAATAAGGCCAGGTTTTATTCTTACAGTGTGCAAACCAACAAAGACTCCTGTTTCAGTCTTAACTAAAACATGTTGAAACATCTCCCGCTATatctaataataacaaaatacaacagcagcCAAACCAAGTCCGTAATCGTTGTCGTATGGCCATAAACAAGGTCCTGATAACCAGAGTACATCCTGTCCCGTACCCGTACTCAGACGCACTGCCAGGCTCTCCTCACTGCCTCTACGCTGCCTGGTTTTATGGAGGAGGGGAGCCAGTCACGTTGGGAACAGCGGGTCAGCTGTTCCGCTATCAGATCCCTCCCCCGGGGTCTGGGGAGGCACAGGCCAGTTCAGGGCGGGTCTGGCCTCAgtgtttatacactcacctaaaggattattaggaacacctgttcaatttctcat

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

NR:

description
PREDICTED: proteasome subunit alpha type-5-like

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013991 False 423 mRNA 0.59 4 48818623 48819833
TU60179 False 1305 TUCP 0.52 5 48817983 48821156
TU60180 False 1314 TUCP 0.51 5 48817983 48821156
TU60181 True 2007 TUCP 0.50 4 48817983 48821156

Neighbor

gene id symbol gene type direction distance location
AMCG00013986 NA coding downstream 10396 48795219 ~ 48807587 (-)
AMCG00013987 NA coding downstream 25108 48792374 ~ 48792875 (-)
AMCG00013981 nfya coding downstream 32758 48776500 ~ 48785225 (-)
AMCG00013980 LOC100690806,LOC102789655 coding downstream 41845 48757586 ~ 48776138 (-)
AMCG00013979 LOC106565664 coding downstream 63156 48745893 ~ 48754827 (-)
AMCG00013990 NA coding upstream 30132 48851288 ~ 48852970 (-)
AMCG00013994 gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853 coding upstream 97241 48918397 ~ 48925913 (-)
AMCG00014000 NA coding upstream 471971 49293127 ~ 49298717 (-)
AMCG00014003 NA coding upstream 481466 49302622 ~ 49310125 (-)
AMCG00013998 NA coding upstream 491154 49312310 ~ 49317429 (-)
G48175 NA non-coding downstream 166754 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 271708 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 311847 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 319272 48461526 ~ 48498711 (-)
G48086 NA non-coding downstream 333673 48479448 ~ 48484310 (-)
G48275 NA non-coding upstream 206128 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 532536 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 631877 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 716572 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 792540 49613696 ~ 49613974 (-)
AMCG00013967 NA other downstream 338406 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 442887 48366043 ~ 48375096 (-)
G47896 NA other downstream 843068 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 949120 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1617086 47188595 ~ 47200897 (-)
G48373 NA other upstream 663344 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 673571 49494727 ~ 49498630 (-)
G48506 NA other upstream 898609 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 900590 49721746 ~ 49724237 (-)
G48510 NA other upstream 907348 49728504 ~ 49729055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004267 psma5 coding NC_007122.7 CM002895.2 36342997 ~ 36350993 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_09017460_09019520 PSMA5 coding CI01000306 null 9017002 ~ 9019869 (-)