AMCG00013994 (gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853)


Basic Information

Item Value
gene id AMCG00013994
gene name gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48918397 ~ 48925913 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013994
CATTCGCTGCCCCTCAAATTCTCTTTCCACAAGGTCCTCCACACAGCCTTCAAGATTTCCTACCTTTCGGATCTTGAGTTGGAGGAGGACGACGACGACCTTGACATGGGAAGTGGCGCAAGCGCAGAGGACAAGGAGCTGGCCAAGAGGTCCAAGGAGCTGGAGAAGAAGCTCCAGGAGGATGCCGACAAGGAGTCCAAGACAGTCAAGCTGCTGCTACTGGGGGCAGGAGAGTCAGGCAAGAGCACCATCGTCAAGCAGATGAAGATTATCCATCAGGACGGGTACTCGGAACAGGAGTGCTTAGAGTTCAGGTCCATCATCTACGGGAACATCCTGCAGTCCATCCTGGCAATCATCCGGGCCATGAGCACCCTGGGCATTGACTACGGCGATTCCTCACGAGCGGATGACGGGCAGAAGCTGTTCAACCTGGCGGACTCTATCGAGGAGGGCACAATGCCGCCCGAGCTGGTGACGGTCATCGTGAAGCTGTGGAAGGACTCTGGGGTGCAGGCGTGCTTCGAGAGGGCGGCCGACTACCTGAACGAGCTGGACCGAATCACCAAACCCAACTACCTGCCCAACGAGCAGGATGTCCTGCGCTCCCGAGTCAAGACCACAGGAATCATCGAGGAGCAGTTCTCCTTCAAGGACGTGCACTTCAGGATGTTTGACGTcgggggtcagaggtcagagcgCAAGAAATGGATCCACTGCTTTGAAGGTGTGACCTGCATCATCTTCTGCGGAGCACTGAGTGCCTACGACATGGTGCTGGTGGAGGACGACGAAGTGAACCGCATGCACGAGTCTCTTCATCTATTCAACAGCATCTGCAACCACAAGTTCTTCGCTGCCACCTCCATCGTGCTCTTCCTCAACAAGAAGGACCTCTTCACAGAGAAGGTCAAGAAGGTCCATCTCAGCATATGCTTCCCCGACTATGACGGTCCCAACACATTCGAAGACGCTGGCAACTACATCAAGAACCAGTTCCTGGACCTGAACATGCGGAAAGATGTGAAGGAGATCTACTCACACATGACCTGCGCCACGGACACACAGAACGTCAAGTTCGTGTTCGACGCCGTCACAGACATCATCATCAAAGAGAACCTGAAGGACTGTGGCCTCTTC

Function

symbol description
gnat2 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within detection of light stimulus involved in visual perception. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in pineal complex and visual system. Used to study achromatopsia and cone-rod dystrophy. Human ortholog(s) of this gene implicated in achromatopsia 4 and color blindness. Orthologous to several human genes including GNAT2 (G protein subunit alpha transducin 2).

NR:

description
guanine nucleotide-binding protein G(t) subunit alpha-2

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013994 True 1140 mRNA 0.55 8 48918397 48925913

Neighbor

gene id symbol gene type direction distance location
AMCG00013990 NA coding downstream 65427 48851288 ~ 48852970 (-)
AMCG00013986 NA coding downstream 110810 48795219 ~ 48807587 (-)
AMCG00013987 NA coding downstream 125522 48792374 ~ 48792875 (-)
AMCG00013981 nfya coding downstream 133172 48776500 ~ 48785225 (-)
AMCG00013980 LOC100690806,LOC102789655 coding downstream 142259 48757586 ~ 48776138 (-)
AMCG00014000 NA coding upstream 367214 49293127 ~ 49298717 (-)
AMCG00014003 NA coding upstream 376709 49302622 ~ 49310125 (-)
AMCG00013998 NA coding upstream 386397 49312310 ~ 49317429 (-)
AMCG00013999 NA coding upstream 394258 49320171 ~ 49326142 (-)
AMCG00014002 NA coding upstream 401529 49327442 ~ 49330861 (-)
G48175 NA non-coding downstream 267168 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 372122 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 412261 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 419686 48461526 ~ 48498711 (-)
G48275 NA non-coding upstream 101371 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 427779 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 527120 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 611815 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 687783 49613696 ~ 49613974 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 97241 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 438820 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 543301 48366043 ~ 48375096 (-)
G47896 NA other downstream 943482 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 1049534 47864850 ~ 47868863 (-)
G48373 NA other upstream 558587 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 568814 49494727 ~ 49498630 (-)
G48506 NA other upstream 793852 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 795833 49721746 ~ 49724237 (-)
G48510 NA other upstream 802591 49728504 ~ 49729055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location