AMCG00014002


Basic Information

Item Value
gene id AMCG00014002
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49327442 ~ 49330861 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014002
ATGAACGGCACAGAGGGAAACAATTTCTACATCCCGTTCTCCAACCGGACGGGCGTGGTGCGCAGCCCCTTCGAGTACCCGCAATACTACCTGGCCGAGCCCTGGAAGTTCGCCACGCTGAGCGCCTACATGTTCATGCTCATCATGCTGGGCTTCTCCATCAATGGCCTGACGCTGCTGGTCACTGTCAAGCACAAGAAGCTGCGGCAGCCACTCAACTACATCCTGGTCAACCTGGCGGTGGCTGGCCTGGTCATGGTGCTGTGCGGCTTTACCATCACCTTCTACACGGCCATGAATGGATACTTCGTGTTTGGGCCCCTGGGCTGCGCCATCGAGGGCTTCTGCGCCACGCTCGGAGgTGAGGTGGCGCTGTGGTCGCTGGTGGTGTTGGCCATTGAGAGGTACATCGTGGTCTGCAAACCCATGGGCAACTTCCGCTTCTCGTCCTCGCACGCGTTCATGGGCATCGGCTTCACCTGGTTCATGGCTTTCACCTGCGCTGGTCCGCCCCTGTTTGGCTGGTCCAGGTACATTCCCGAGGGCATGCAGTGCTCCTGTGGACCGGACTACTACACCATGAACCCACACTACAACAACGCCTCCTACGTCATCTACATGTTCGTTGTACACTTCCTGATTCCCATGGTGATCATATTCTTCTCCTACGGCAGGCTCCTATGCAAAGTGAAGGAGgCAGCGGCATCCCAGCAGGAGTCTGCCTCGACACAGAAGGCTGAGCGCGAGGTGACAAGGATGGTGATCCTGATGGTCTTTGGCTACTTGGTGGCCTGGGTGCCCTATGCCTCGGTGGCCTTTTGGATCTTCATGAACCAGGGCGCTGACTTCTCTGCCATTGCTCTGCAATCTGCGCAGACGGACCTGCCTCCCCCATCCTGGGCAGGTCTGGGTTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014002 True 915 mRNA 0.58 5 49327442 49330861

Neighbor

gene id symbol gene type direction distance location
AMCG00013999 NA coding downstream 1300 49320171 ~ 49326142 (-)
AMCG00013998 NA coding downstream 10013 49312310 ~ 49317429 (-)
AMCG00014003 NA coding downstream 17317 49302622 ~ 49310125 (-)
AMCG00014000 NA coding downstream 28725 49293127 ~ 49298717 (-)
AMCG00013994 gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853 coding downstream 401529 48918397 ~ 48925913 (-)
AMCG00013997 NA coding upstream 16423 49347284 ~ 49352698 (-)
AMCG00014001 itpr3,LOC106572092,LOC107731245 coding upstream 24101 49354962 ~ 49385651 (-)
AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding upstream 125766 49456627 ~ 49463170 (-)
AMCG00014008 NA coding upstream 133578 49464439 ~ 49470132 (-)
AMCG00014006 NA coding upstream 151181 49482042 ~ 49486442 (-)
G48275 NA non-coding downstream 277010 49027284 ~ 49050432 (-)
G48175 NA non-coding downstream 676213 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 781167 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 821306 48505871 ~ 48506136 (-)
G48086 NA non-coding downstream 843132 48479448 ~ 48484310 (-)
G48363 NA non-coding upstream 22831 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 122172 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 206867 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 282835 49613696 ~ 49613974 (-)
G48433 NA non-coding upstream 287416 49618277 ~ 49618955 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 506286 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 847865 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 952346 48366043 ~ 48375096 (-)
G47896 NA other downstream 1352527 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 1458579 47864850 ~ 47868863 (-)
G48373 NA other upstream 153639 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 163866 49494727 ~ 49498630 (-)
G48506 NA other upstream 388904 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 390885 49721746 ~ 49724237 (-)
G48510 NA other upstream 397643 49728504 ~ 49729055 (-)

Expression


Co-expression Network