AMCG00014009


Basic Information

Item Value
gene id AMCG00014009
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49552159 ~ 49556841 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014009
CCGGCCCGGCCCGCCCCCCGGATATTACAGCCCGCAGCGGCCCGGCTGCGCACACGCTGCTATCGCTGTGTTATAACGCAGGAAGACTCAGAGTTACACACTGCGGTGTTACTACTGAGAGCACAGGCAGAGGAAGTGCGTGTTTCCTCTCCACCATCGCCGACACGTCCATTCATTCTCACTGCAGCCCTGCGGAGCTACTACAGACTTCATCCTCCACCCTTGTGGCAGCATGGCAATGCACAGGACCCCGACCCGAGCGGTGCGCCGGAGTCTGTTCGGACGGGCCGATCCGGCGCAGCTGCAGGCGGAGTGCGCGGCAGCGCTGCGGCAGGAGCTGGAGGCGTCGTCCCGGCGCTGGGGCTTTGACTTCCTGAACGAGACACCTCTGCAGGGGGGCCAGTTCCAGTGGGAGTGCGTGTCGGGAGCCAAGGTGCCCGCTCTGTACCGCTCCTGTATGCTGAGCTGCCGCGGCCAGGGGGCGCTGCCGAGGCCCGAACACGGCGCTGGCAAGGAGAACATGCCGCACACGCGCAAGAAGAACGCCACGCACCCTGTGCAGGAATCCACGCCGCAGAAGAGACTGGCCCCCAGCCTGGCCCCCTGCCAGGCCCCCTGCCAGGCCCCCAGCCAGGCACTGAAGAGGAAGCAGACGAACATCACAGACTTCTACCAGACCAAGAAGAGGGTGGTGGCGACACCGCGGAAGTCCGGGCAGTGAGCGGTGCATGCcggggagatgggggggggggacacttGGCacactgcaccccccccccaggccCACAGCCACTCAGCTGTGCGTGATCAGAGACGCACAACCCCAGGACACACAGCGCTGCTTCACTATAAAGACTCTGTATGAAGATATAGGactcctcttctcctcctgaGCACTTTCCTGTCTTTGTTTATAAGCTTTTTTCTGGGGAGGGGGCACCAGCCCTCCACTACCCCCATACAGTAGCAGGAGTCGGGATCGTGCCTGGACCCGCTCCACCAGACCGCCGAGCTCGAAGCTGCTGGTCTGGGTAAGAAGTCATTAACGATTAACGCTCCCTGGGCAGCGTGTTGATCCTCGGACGTTCCTCTCCAGTGAATATTCCAGTGCCACACAACCTCATGAACAACCCGTGCAATAAGCCATGACAAAGTGAACCGCAGGAGCACAAGCCAAGGACCTTCGGTGTCACGGTGGTGTTTTGTCCATGTGCTGACGAGTGCATCTGTAGCCTCCGTGTTCACACCCACTCTGCAGGACAGAAACTGTTGTTAACGGTGTTACTGTTGGTCTCTGAAAGCTGTGTTCTCTGCCATTAACTGCTGGCTCTGTGCCTGAAGCTGCATTAATGACTGATGGGAGGCACACTGCGCTGGGCTGTTGTGTCTCCTGTAAAcggtttaaaaaacacaaaacctcaGACCTGGAGGACaatcaggggaaaaaaatgagaatttatttattacaaaatgtggattttgtttattgttatgtattaaataataaatatttgtatcattCCTGTTTGGTCTCTGCTTCCTTCTTTCTTAGTACAATTTCAGCAGCGTGCTCGGAGCTCCATGTGTGTATAACCGCA

Function

GO:

id name namespace
GO:0010165 response to X-ray biological_process
GO:0035914 skeletal muscle cell differentiation biological_process

KEGG:

id description
K06625 CDKN1A, P21, CIP1; cyclin-dependent kinase inhibitor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014009 True 1598 mRNA 0.57 3 49552159 49556841

Neighbor

gene id symbol gene type direction distance location
AMCG00014004 NA coding upstream 103408 49441384 ~ 49448751 (+)
AMCG00014005 LOC108246070,LOC106532244,LOC100709513 coding upstream 132262 49413955 ~ 49419897 (+)
AMCG00013993 NA coding upstream 595294 48939062 ~ 48956865 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding upstream 639091 48908137 ~ 48913068 (+)
AMCG00013995 NA coding upstream 648129 48896802 ~ 48904030 (+)
AMCG00014022 NA coding downstream 8123 49564964 ~ 49569099 (+)
AMCG00014015 NA coding downstream 13360 49570201 ~ 49586822 (+)
AMCG00014013 NA coding downstream 31336 49588177 ~ 49594866 (+)
AMCG00014016 NA coding downstream 53516 49610357 ~ 49613183 (+)
AMCG00014017 LOC103467055 coding downstream 63792 49620633 ~ 49627765 (+)
G48372 NA non-coding upstream 67200 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 95461 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 98287 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 440076 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 501861 49027168 ~ 49050298 (+)
G48449 NA non-coding downstream 122656 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 172830 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 196743 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 236365 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 300639 49857480 ~ 49857687 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 6824 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 203558 49345097 ~ 49348601 (+)
G48231 NA other upstream 451701 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 456613 49014629 ~ 49095546 (+)
AMCG00013985 NA other upstream 723184 48821250 ~ 48828975 (+)
AMCG00014021 NA other downstream 56860 49613701 ~ 49620027 (+)
G48451 NA other downstream 132831 49689672 ~ 49692361 (+)
G48453 NA other downstream 141779 49698620 ~ 49699622 (+)
G48454 NA other downstream 144410 49701251 ~ 49701943 (+)
G48455 NA other downstream 146237 49703078 ~ 49703528 (+)

Expression


Co-expression Network