AMCG00014017 (LOC103467055)


Basic Information

Item Value
gene id AMCG00014017
gene name LOC103467055
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49620633 ~ 49627765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014017
ATGCAGGGCAATATTGTTAGTTTAGTGAAGACAGGCCGGTTCCGCGCAGACAACCTGAACAAGATGAAGAACCTGTGCAGCAAGACCATCGGAGAGAAGATGAAGaagAAGGAGCCGGTGGGTGATGACGACTCTCTGCCTGCGGAGGTGCAGAGTCTGGAGGGGCTGACGGCCGAGGTGCTGGCGGCTCTGAGTGTGACGCAGATCAAGCGTGTGCGTGTGCTGGTGGATGAGGCCATCGCAGAGGGGGACGCGGAGCGGCTGTGCCTGGAGGGGCAGAGGTTCGAGTTCCTGCGTGAGATCGGAAACCTGCTGCACCCGAGCGTGCCCATCAGCAATGACGAGgACAATGACAACAAGGTGGAGCGCACCTGGGGTGACTGCTCAGTGCAGAAGAAGTACTCCCACGTGGACCTGGTGGTGATGGTGGACGGTTACGAGGGCGAGAAGGGGGCCGTGGGGGCGCTGGTGTTCCTGGAGCAGGCGCTGATCAACTACGCGCTGCAGATGCTGCACGGCAAGGGCTACACACCCCTCTACACACCCTTCTTCATGAGGAAGGAGGTGATCGGGAAGGGCAGCGAGCGGGCCGAGGACGCCACTGTGGACGAGAAGTACCTGATCGCCACGTCGGAGCAGCCGATCGCCGCCTTCCTGCGGGATGAGTGGCTGCGGCCCGAGGACCTGCCCCTGCGCTACGCCGGCCTGTCCACCTGCTTCCGCCAGGAGGTGGGCTCCCACGGGCGCGACACGCGCGGAATCTTCAGGGTGCACCAGTTCGAGAAGATCGAGCAGTTTGTTTACGCCTCTCCGCACGACAACAAGTCCTGGGAGATGATGGACGAGATGATCGGCACAGCGGAGGAGTTCTACCAGTCGCTGGGCATCCCCTACCGCATCGTCAACATCGTCTCAGGCTCTCTGAACCACGCTGCCAGTAAGAAGCTGGACCTGGAGGCCTGGTTCCCCGGGTCGGGGGCGTTTCGTGAGCTCGTCTCCTGCTCCAACTGCACCGACTACCAGGCTCGGCGCCTGCGCATCCGCTATGGCCAGACCAAGAAGATGATGGACAAGGCGGAGTTTGTCCACATGCTGAATGCCACCATGTGTGCCACCACGCGTGTGATCTGTGCCATCCTGGAGAACTACCAGACAGAGGAGGGCCTGACAGAGATGATCCGGTTCGTGAAGCCGGCGCCCATCGATCAGGAGCTGTCCAAGAAGCAGAAGAAGCAGCAGGATGGAGGCAAGAAGAAACAGCAGGGCTTGGTGGACCCGGGCCTCCAGAACCAAGTGGAGAACATGTCCGTCAACGACTCCTAGACACACGCACATTGATTCCAGGACCTACCTGTCTGTCCgcctgtccgtctgtccgtccgtctgtcCGGGTGTTCCTGGGTGTTGGGGAATCAAATCTTGTCTCTGCTTCTCTTTGTGTCGGATGTTCAGTGTAGCAGCATAAATAAACAGTTCCAACAGACACGAGCCGCTCCTGcctgagtgtgtgcgtgtgcacgtg

Function

NR:

description
PREDICTED: serine--tRNA ligase, cytoplasmic-like

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014017 True 1522 mRNA 0.60 11 49620633 49627765

Neighbor

gene id symbol gene type direction distance location
AMCG00014016 NA coding upstream 7450 49610357 ~ 49613183 (+)
AMCG00014013 NA coding upstream 25767 49588177 ~ 49594866 (+)
AMCG00014015 NA coding upstream 33811 49570201 ~ 49586822 (+)
AMCG00014022 NA coding upstream 51534 49564964 ~ 49569099 (+)
AMCG00014009 NA coding upstream 63792 49552159 ~ 49556841 (+)
AMCG00014025 celsr2 coding downstream 2044 49629809 ~ 49633867 (+)
AMCG00014020 NA coding downstream 20033 49647798 ~ 49653162 (+)
AMCG00014018 celsr2,LOC106565652 coding downstream 25883 49653648 ~ 49673751 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding downstream 52756 49680521 ~ 49682420 (+)
AMCG00014019 NA coding downstream 59043 49686808 ~ 49688657 (+)
G48372 NA non-coding upstream 135674 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 163935 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 166761 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 508550 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 570335 49027168 ~ 49050298 (+)
G48449 NA non-coding downstream 51732 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 101906 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 125819 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 165441 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 229715 49857480 ~ 49857687 (+)
AMCG00014021 NA other upstream 606 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 75298 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 272032 49345097 ~ 49348601 (+)
G48231 NA other upstream 520175 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 525087 49014629 ~ 49095546 (+)
G48451 NA other downstream 61907 49689672 ~ 49692361 (+)
G48453 NA other downstream 70855 49698620 ~ 49699622 (+)
G48454 NA other downstream 73486 49701251 ~ 49701943 (+)
G48455 NA other downstream 75313 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 79078 49706843 ~ 49717428 (+)

Expression


Co-expression Network