AMCG00014023


Basic Information

Item Value
gene id AMCG00014023
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49595783 ~ 49607194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014023
ATGTCATCAGGCCCCTGCAGAGCGGGGCGACTGGGCTCTCTGATGGAGCTGCGGCGCGGCTCCCCGGCCAAGCACTTCGAGGACCTGACCCTGGACTCTGGGTATGGCGGCATGGCCGGCTCCTGCCGCTCCTCGGTGCTGTCGCTGTCCCCCTCCCACCTGGACGCCCCCCCCGGGCCCGACAGCGGGCTGTGGACTCTGCCAGGGGACGGGCCCTTCAGGGAGGGGCTGGCCGGCGGCGTGGGGTGCCACCAGTGTGTAGAGGGGCACCCCGAGGGCCTAGAAGGGACCTGGCCCAAGCTGCCCCCGCTGGACAGCCTGCCGTGGGCGGAGGAGTTGGTGGGTGCCGTGGTGCGCCGGTGCCTGCCCCGCTGGGCTGTGTCCGGGCCGCTGCTGGTGCGCCTGTCCCGGTGCCTGGGCCGGGTGCTGTGGCGGCTGTGCCAGGAGGCCCGGCGGCTGAGCCTGCAGTGTGGCCAGTGCTCACAGCATGAGGTGCGCACGGCCGCCAAGCTGCTGCTGTCCTGGACGCTGTCCGAGGCCTGGGTGGCGGCAGGGCGCCGGGCTCTGTCTGCGCGGGAGATGAGCGTGGACGAGCCACACGCCCGGGGGCTGAGCGCGAGGGCCGGCCTGGTGCTGCCCGCCGGCCGGCTGTTCCGTTGGTTGGTGGAGGCCCGCGTGGCGCCCCGCGTGCAGGAGGAGGCGGCGCTGGACATGGCTGCTGGGCTGCAGGCGCTGCTGGAAGAGCTGTGCGAGAGGCTGGACCGGCAGGGGCCGCCCGGGGACAACGAGGCCGCGGCCCTGGAGCAGCTGCTGAGAAGTGACCCTGAGCTGTGGGGCCTGTGCCAGCCCTACCAGCACCTGCTGTGCGGCAAGACGGCCTACGGTGTGCCAGTCCTGCCCTCGTACCTCGCTGCGTACCCTTGCGGGTCCCTGGGCCGCCCCCCCCGCGCACCCCCCCTGCGGCCCTCCGAGCTGCAGAACCTGGAGCACAGCCTGCTGACCTGCTCCGTGGACAGCGTGGCCGAGCTGAGCGCCCTGGTGGTGAACTCTATGTACGCTCTGCAGCGGCTGGGCTCACACGGCGCCGCCGGGACCTTCCAGCTGCACTTCAGAGAGGGGGTGCTGTCAGAGGTCACGCAACCGCCCCTGGCTGAGTGGCTGCGCGTGTGTGTGGCGCTGGCGGAGCACCGCTTCAGCCCCACGGTGGACAGCGCTGACGTCACACAGGCTGCCCGGCTGCTGCTGCCCGGCGCCGACTGCCCGCCTCGCCCACTCAGTATCGCCCAGCTGCTGCTGGAGTCTGGGGCCGATGTGGACGGAGGGGGCAGTGAGGGGGAGCCGGTCGAGACGCCTCTACAGCTGGCAGCCGCCGCAGGTCACGAGGAGCTGGTCTCCCTGCTGCTGGAGCACGGCGCCGACCCTCTCTCTGGAACCTCCAGTAAGACAGTGGGTGCCACCTCACTGCGGGGCACCTCCAGCGCCTTCTCCCTGGCAGCAGCGCACGGGCACAGGGACGTGCTGCGGAAACTGCTGTCCCAGCCGGAAAATGACATCCTGACGCTGGAGGACATGCTGGCGGAGGGGGCGGCCGAGGCGGGCGAGGCGGGCAAGGCGGGGGGGCAGAGCCGCAGTGGCCGCGCGCGTCGGAGGGCCCTGCAAGAGGCGCTATACCTGAGCGCTGAGCACGGCTACCTGGACATCGCCCTGGAGCTGCGGCAGCAAGAGTCAGTGCCCTGGACGCTGCATAGCTGGCTGCAGTGTGTGAGAACCTCCTTTTGCCAGCGCCGCTGGGACGTGACGCACAGCCTGCTGGGAGATTTTTCGTCGCTGAAGGAAGTGTACAGTGAGGAGATGCTGAACGAAGGGCTGCCTCTGCTCTTCGACATCCTGCTCTCCTGCCAGAGTGAGTCCACCGTGCAGCACCTGGCGTCTATCCTGTCCTGCTGCTACGGCCCCTACCCCCCCCCAACAGTGCACGACAGTGCCCCCCCACGGCACGCACGACTCGACCCCGCCCTCGTGAACAGCAGAGAGACCGCAGACCTCACCTTCCTGGTGGAGGGGAAGCCTTTCTACGCACACAGGGAGGTTGTGACCTCGGCGTCTCCCAGCCTGCAGAAGCTCGTCTCTAAGGCCACTCCCTCTGCCCAGGTGGAGATCCCGGATATCAAGTACAGCACCTTCCAGGTCCTCCAGGCTGCCCACTCGCTCTGTCTGCGGCCCCTGAAGAAGCACTGTGAGATGCTCTGCTCCAAATACCTGCACCCCAGCGACGCCGCCACCTTCTACCAGCAGGCCCAGCTGTGCCAGGCCCGGGATCTCAAGGCGTTCTGTGAGGGCTACTTCCTGAAGAACCTGCCGGTGCTGCTGGAGGTTGGCTCCTTCCGGCGCCTCCTGCTGGCGGGAGACGGTGCCGCAGCCGACGAGGGCCTGGGTCACGACCTCCTGCGCACTCTGTCCTCCAGGATGAACGCCATCCACCAGCCCCTGGCCAAGGAGACCATGGTGTAGAGCGTGAGGGCAGGGCTCCGCCGGGCCAAGCTGGCACGGATCATACCAGGATGTCCTTTGAGTTGATTCGATCTTGTTTATGTCATGCGTTGTCTGACGGTCAGCGCCGGCGCCGGTCCACATCGGCCCACACACCAGCGCCACCTCCTGCCTCGGCTGTGTTTGAATTTGTGCTTTTATATCTATTCTTTGAAATAACAGGAGCACAGATTTTATGACGTTCCTGTTCTTAACTGgggtttaaacaatgtgaagaagaaacaatacaatataataataatgctgtgaCGGCAGCTGTGGGCACCCCCTGGTGTTGGGCTCCCTGAAGCTCCAGCCCCCCGCAACTGATCAATCTGCCAAGCAATAATCTTTCATTTAAGCGCCTGTCAAGCCAAGGAATGCCAACGCTGCGCATGAAcgacaaaacacaacacaagcagCGACACAGGCAGCAGGCGCCCCCTGGACAAGATCTTCCCCGATAAGACCGCACTGCCCTGAGCCGGCACCTGGACACTTGGACGCCCACACAAGCAGGACAGTTCGGTGGGGCACGGGACCGTTTGAACACTTCCTGCCCCCTCTCAGGCCGGAGCGCGGAGTCAGGGGCCGTCTGAGCGGCTTTTCATTGCAGGGACTGTCCTCCAGATAGGGGTGTGTTTTTCCCCTGTGGGGGACCCCTCTGTTGAGTTGTGTCTGCACCCCCCTGCCCCGTGTCCGCATTACGAAACTGACGTGCAATACTGTGAATTCAACATTTCCCTTCCTTTACAGCTTCAGGaaagttttattatattttattttattttattttatggaggCTTTCGTTTTATTTAAGgtaatttttttatgtttgtacaGAAATCTAAAGTTATATAATAACaaatgattataaaataaaagtcgCCTCTATGCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014023 True 3430 mRNA 0.64 14 49595783 49607194

Neighbor

gene id symbol gene type direction distance location
AMCG00014012 NA coding downstream 37023 49557804 ~ 49558760 (-)
AMCG00014011 NA coding downstream 73163 49505466 ~ 49522620 (-)
AMCG00014006 NA coding downstream 109341 49482042 ~ 49486442 (-)
AMCG00014008 NA coding downstream 125651 49464439 ~ 49470132 (-)
AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding downstream 132613 49456627 ~ 49463170 (-)
AMCG00014024 NA coding upstream 71126 49678320 ~ 49680362 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding upstream 82485 49689679 ~ 49694164 (-)
AMCG00014035 NA coding upstream 90667 49697861 ~ 49703373 (-)
AMCG00014036 NA coding upstream 143274 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 176078 49783272 ~ 49788746 (-)
G48398 NA non-coding downstream 710 49537728 ~ 49595073 (-)
G48370 NA non-coding downstream 141911 49453033 ~ 49453872 (-)
G48363 NA non-coding downstream 241248 49353692 ~ 49354535 (-)
G48275 NA non-coding downstream 545351 49027284 ~ 49050432 (-)
G48175 NA non-coding downstream 944554 48645190 ~ 48651229 (-)
G48430 NA non-coding upstream 6502 49613696 ~ 49613974 (-)
G48433 NA non-coding upstream 11083 49618277 ~ 49618955 (-)
G48437 NA non-coding upstream 14903 49622097 ~ 49623191 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding upstream 16616 49623810 ~ 49627767 (-)
G48494 NA non-coding upstream 55898 49663092 ~ 49675750 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 97153 49494727 ~ 49498630 (-)
G48373 NA other downstream 111016 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 774627 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 1116206 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1220687 48366043 ~ 48375096 (-)
G48506 NA other upstream 112571 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 114552 49721746 ~ 49724237 (-)
G48510 NA other upstream 121310 49728504 ~ 49729055 (-)
G48516 NA other upstream 137752 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 257128 49864322 ~ 49930152 (-)

Expression


Co-expression Network