AMCG00014025 (celsr2)


Basic Information

Item Value
gene id AMCG00014025
gene name celsr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49629809 ~ 49633867 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014025
ATGCAGCTCCGGGGCCGGTCCTGTCTGTCGTCTCCTGTGTCTCCTCTCCTCCGCCGTCAGGAGCGCTTTATGGTAATCAGCCGCTCGCAGGcgcaggcagcagcagcagcggcggcGGCGCGGAGCCATTTTGAGGAGAACAATCGAGAGGAGAGACGCGGAGCCGCCGAGCGGCGGATAAAGACGCCGACAGACAGACGCGTCCGTTCGCGTCCCGCAGCTCCTTCCAGGTTTTCCGGGTTTTCCAGGTTTTCCaggtttcctttgtttttgtgttgttttgtccCTGCCGTGGCAGCATGGGGACGGCGCCGCAGCGCAGGAGACCGGCTCGGAGGAAAGTTTGAGCGGCGTCTGCGGAAAACAGCTACGATAACCtccagagccagagagagagccAGAGCCGGAGACGGACAGAGGGACCGGGCGATGGGGCGACCCTCCAAGGGGACCATGCGGGTCCCGCACTGGGCTCTGCTCTGCACCTGCGTGCTGGCGCTCTCCGCGCTGTCCGACTGCTACCGCGTCCACCTCGGCGAGGGCGCCGCACCCGGGACGCTGCTGGCCAGCCTGGGACCGGGCAGCACCTGCCGGCTGGATCAGGTGATCGGCCCCCGATTCACAGACGCGCTGCTGGAGACGGACGCGGCGGCCGGCACGGTGTCCCTCTCCCAGGCGCTGCGCTGCGCCCGGCTGCCCCTAAACCCCTTCACCCTGTACACCGCCGCTCACTGCCCCGGCGCGCCGGGCTTCAGCCACTTCGTCGCCAGCCGCTACGAGGTGCATCTCCACGGCAGGAGCTGCTTCTCCAAGCACCGGAGGAAAGCCACCCGCGACGTGGATGTAATCAGCCTGCTGCCCCTGCACAGCCCCCAGCCACAGTGCTACCAGCCCGGGGCTCTGCTGTTCGGCGTCGGCGAGCTCCTGCCAGGCTGGCTGGCCCCCTGCGGCTTCCCCTGCAGGGTGGCGGGTGACCCCGGAGTGCACTTCTCCGACAGCGGGCTGTTCGCCTCCCGCCGCCTGTGTCTGCAGCGCAGCTCCCTGCTGGCCCTGGACATGCAGTGCGACAGGTGCGTGGGGGAGGGGCCCGGGGCCCAGGGCCCTGTGTCGGTGCTGTGGCGGATCGGACTGGGCTCCTTCAGGCAGCAGCACCTGCACCGGCTGCTGCGCCTGGCCGCGCACTCCCCCGCTGGGCTGGtcagcaggaggaagaggaacgTCAACTCCAGCCCGCAGTTCCAGCCGCCCATGTACCAGGTGGCGGTGCCAGAGAACCAGCCGGCAGGCACGGCCGTGGTGCTGCTGCGGGCGGTGGACACGGACGAGGGTGAGGCGGGGCGGCTGGAGTACTCGATGGATGCGCTGTTTGACAGCCGTTCCAACAGCCTGTTCAGCCTGGACCCACAGACGGGCGCGGTCAGCACCGCCCAGCCTCTGGACCGTGAGACCAAGGACACGCACGTGTTCCGGGTCACGGCTGTCGACCACGGCTCCCCGCGCCGCACCGCCATGGCGACGCTCACCGTGTCGGTCAGCGACACCAATGACCACGACCCCACCTTCGAGCAACAGGACTACCGGGAGAGCGTGCGCGAGAACCTGGAGGTGGGCTATGAGGTGCTGACGGTCCGGGCCACCGACGGGGACGCCCCGGCCAACGCCAACATCCTGTACCGCCTCCTGAACGGCAATGGCTCCAACAGCGTGTTCGAGATCGACCCGCGCTCCGGAGTGATCCGCACGCGCGGCACGGTGGACCGGGAGGCGGTGGAGGCTTACATGCTGCTGGTGGAGGCCAATGACCAGGGCCGTGACCCTGGGCCACGCAGCGCCACCGCCACTGTCTCCATCACGGTGGAGGACGACAACGACAATGCGCCGCAGTTCAGCGAGAAGCGCTACGTGGTGCAGGTGCCTGAGGATGTGGCGCCTGGCACAGAGGTCCTGCAGGTCAGTGCCAGCGACCGTGATCGTGGCAGCAACGCCGTGGTCCACTTCAGCATCATGAGCGGCAACACGCGGGGCCAGTTCTACATCGACGCCCAGACCGGCAAGGTGGACGCGGTCAGCCAGCTGGACTATGAGGCCAACAAGGAGTACACGCTCCGCATCCGTGCTCAGGACGGCGGCCGCCCCCCCCTGTCCAACATCAGCGGGCTGGTGACGGTGCAGGTGCTGGACATCAACGACAACGCACCCATCTTCGTCAGCACGCCCTTCCAGGCCACCGTGCTGGAGAACGTGCCGCTGGGCTACTCTGTCCTCCACATCCAGGCCATCGACGCCGACTCGGGCGATAACGCGCGGCTGGAGTACCGGCTGCTGGACGTGTCGCCCGGCTTCCCCTTTGCCATCAACAACAGCACGGGCTGGATCGTGGTGGCGGCCGAGCTGGACCGTGAGACCGTGGACTTCTACAGCTTCGGCGTGGAGGCGCGCGACCAGGGCAGCCCGGCTATGTCCTCCTCCGCCAGTGTCAGCATGACCATCTTGGATGTGAATGACAACAACCCCGAGTTCACACAGAAGTCCTACAGCGTGCGGTTGAACGAGGACGCGGCGGTGGGCAGCAGCGTGGTGACGGTGTCGGCGGTGGACCGCGACGTCAACAGCGTGGTGACCTACCAGATTGCCAGCGGCAACACACGCAACCGCTTCTCCATCACCAGCCAGAGTGGCGGCGGCCTGGTCACGCTCGCCCTGCCGCTAGACTACAAGCTGGAGCGGCAGTACGCGCTGAGCATCACCGCCTCCGACGGAACCCGCTCCGACACGGCACAGGTCTTTGTCAACGTCACGGATGCCAACACACACCGGCCCGTGTTCCAGAGCTCGCACTACACAGTCAACATCAACGAGGACCGGCCCGTGGGCACCACCGTGGTGGTCATCAGCGCCACGGACGAGGACACGGGCGAGAACTCCCGCATCACCTACTTCATGGAGGACAGCATCCCGCAGTTCAGCATCGACCCCGACTCGGGCGCCGTCACCACGCAGACGGAGCTGGACTACGAGGACCAGGTGTCCTACACTCTGGCCATCACCGCCCGCGACAACGGCATCCCGCAGAAGTCCGACACCACTTATCTGGAGATCCTGGTGAATGACGTGAACGACAACGCGCCCCAGTTCCTGCGTGACCGCTACCAGGGCTCGGTGCTGGAGGACGTGCCGGCCTTCACCAGCGTGGTGCAGGTGTCCGCCAGTGACCGCGACTCGGGGCTCAACGGCCGCGTCTTCTACACCTTTCTGGGCGGCGACGATGGCGACGGCGACTTCATCATTGAGTCGACCTCGGGCATCGTGCGCACGCTGCGCCGGCTGGACCGCGAGAACGTGCCCGTGTACGAGCTGCGTGCCTTTGCTGTGGACAAGGGCGTGCCGGCGCTGAAGACACCCGTGGACATCCAGGTGTCGATCCTGGATGTCAACGACAACCCGCCCGTATTCGAGAAGGACGAGTTCGACATCCTGGTGGAGGAGAACAGCCCCATCGGCCTGGTGGTGGCGCGGGTCACGGCCTCGGACCCCGACGAGGGCAGCAACGCACAGATCATGTACCAGATTGTGGAGGGCAACATCCCTGAGGTCTTCCAGCTGGACATCTTCTCCGGGGAGCTGACCGCCCTGGTGGACCTGGACTACGAGAGCAAGGCGGAGTACGTGATCGTGGTGCAGGCCACCTCCGCGCCGCTGGTCAGCCGCGCCACCGTGCACATCAAGCTGGTGGACCAGAACGACAACCTGCCGGTGCTCAAGAACTTCCTCATCATCTTCAACAACTACGTCACCAACAAGTCTAGCAGCTTCCCCACCGGTGTGATTGGCCGCGTCCCTGCCCACGACCCCGACGTCTCAGACACGCTGCGCTACACCTTCGAGCATGGCAACGAGCTGGACCTGGTCATCCTCAACAGCAGCACCGGGGAGATCCGGCTCAGCAGCGCGCTGGACAACAACCGGCCCCTGGAGGCCACCATGACAGTGTCTGTCTCCGGTAAGAGCCGGgcttctctctccctgctgcggggtgtgtgtgtgtgtgtgtgtgagtga

Function

symbol description
celsr2 Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Acts upstream of or within several processes, including cell-cell adhesion; epiboly involved in gastrulation with mouth forming second; and facial nucleus development. Located in plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human CELSR2 (cadherin EGF LAG seven-pass G-type receptor 2).

NR:

description
PREDICTED: cadherin EGF LAG seven-pass G-type receptor 2

GO: NA

KEGG:

id description
K04601 CELSR2; cadherin EGF LAG seven-pass G-type receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014025 True 4059 mRNA 0.66 1 49629809 49633867

Neighbor

gene id symbol gene type direction distance location
AMCG00014017 LOC103467055 coding upstream 2044 49620633 ~ 49627765 (+)
AMCG00014016 NA coding upstream 16626 49610357 ~ 49613183 (+)
AMCG00014013 NA coding upstream 34943 49588177 ~ 49594866 (+)
AMCG00014015 NA coding upstream 42987 49570201 ~ 49586822 (+)
AMCG00014022 NA coding upstream 60710 49564964 ~ 49569099 (+)
AMCG00014020 NA coding downstream 13931 49647798 ~ 49653162 (+)
AMCG00014018 celsr2,LOC106565652 coding downstream 19781 49653648 ~ 49673751 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding downstream 46654 49680521 ~ 49682420 (+)
AMCG00014019 NA coding downstream 52941 49686808 ~ 49688657 (+)
AMCG00014027 NA coding downstream 61399 49695266 ~ 49697020 (+)
G48372 NA non-coding upstream 144850 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 173111 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 175937 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 517726 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 579511 49027168 ~ 49050298 (+)
G48449 NA non-coding downstream 45630 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 95804 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 119717 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 159339 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 223613 49857480 ~ 49857687 (+)
AMCG00014021 NA other upstream 9782 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 84474 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 281208 49345097 ~ 49348601 (+)
G48231 NA other upstream 529351 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 534263 49014629 ~ 49095546 (+)
G48451 NA other downstream 55805 49689672 ~ 49692361 (+)
G48453 NA other downstream 64753 49698620 ~ 49699622 (+)
G48454 NA other downstream 67384 49701251 ~ 49701943 (+)
G48455 NA other downstream 69211 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 72976 49706843 ~ 49717428 (+)

Expression


Co-expression Network