AMCG00014026 (med20)


Basic Information

Item Value
gene id AMCG00014026
gene name med20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49703711 ~ 49706258 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014026
ACAACGCCGGATGTTCTTGCTCTCGGGGCTCGGTGGCGTGCAGAGATGGGGGTGACTTGtgtgtgccAGGTGCCTGTGTCCGAGGGGAAGAGTGTGCAGCAGACAGTGGACGTGCTGCACAGGAAGCTGGAGCAGCTGGGGGCAGTGAAGCAGGGCAGCTTCACAGTGGACTGTGAGACGTACCACACTGGGGCCGGCAGCATGGGCACTGCGGgaCAGCCGGCGAAGTTCCTGTATGTGATGCACAACTCGGAGACGCCACTGAGCTGCTTCGCTTTGTTCGAGGGGGGACCCTTTCTGGCCGCCGACCCCAACTTCGACGTGCTGATGGCCAAGCTCAAAGGCCACTTCCAGAACGCCAAGGGCCACAAGGTGGAGAGCCGCGGCACGCGCTACCTCTACTGTGACTTCCTGGTCAAAGTGGGCACCGTCACCATGGGCTCCAGCGCCAGGGGCATCTCCGTGgagGTGGAGTACTGCCCCTGCGTGGTGCCCAGTGACTGCTGGAACCTGATGAAGGAGTTCATGGTGAGCTTCTTGGGGCCCCATGCCCCCGAGCTGCCCAGCGCCTTCACCGCCAAGCCCGACGGCCTGTACAGCCCCGCCGAGGGCGCCGACACCATGGCACAGTATCTGGAGCTGTTCGGCAAGGTACGCAAGCAGCAGGTGGCATCTGGTGGAAGCATGCGCTGAGGAGGGGGCAGAGGCCACTCTCGGGGTCCGACACACAGGACTGCTTGAGCGGCTCTGTGCACAGGATCTATTCTCAGCCACCCCTCCTGAGTACCCGAGTGTGGGTCTGGACTGAGGATGGGACACTGACTGGCTCCGGGGGGGAACCCAGATGTTCTCGGATAACAGCGCCTGGTCCCGCTCTCAGGAGGTGTTGTAACCAGGCGTGTTTTCTAGGGTCTGGTGGAGTCAGCCactgtgttttcttattttttggtcACCATCTGAACTGGCTTTGTACTGCATTTCaagtaaaactttatttttacataattaaagtCTGGGTGTATTtttctgcagagagagacagattaaACAGGCTGCCGGTCTGTTCTGTGTGGATCTCCATGTTGGGGActtgatttagattttaaacataaatcagatgcctaaaacaaaacaataaaacagtggaTTGAATTTACCAAtgatgtgaaataaaacaattagttCTAATTCCTATAgaaaagatacattaaaaattttaataacattttattatttcttgggaattctgttttttgtgtccGTATGACTCTTTGGCTGCCCTGTGCCACACTCGTATTTGTACATTGAAGGGATTATGATGTTAGAACGGCTTAATTAGCCATATGGGCTGTTTCCACTGTATGATCAGCTCAGCTGTAGATAGTTGACTCATTGTGTTTGCACTGCTGTaatgttgtatatataatacGGTGCAGTGTAATCTATTGTAGTGTAGTAATGCTGTTAATTACATACTGTGGTATTAGAACGGCTTCTGACATAAATATACTACTTCCATCCTGTCATAGACTCGAACACACCTGCCTGTATACTGCCAGCACTAATCCACTTACTGTCACACCATTTCTTAGGCACATACTCCTAACCTGCTTTCTCCCACTTACTCTAAGCTAGTAACTCGCGCTGATGGTGGGCTGCACACTAGCCCCCAGGCAGCGCCCCCAGGCCCGAGCCCCTCACATGCGGTGTGCTGGGGTCCTGCAGCGCTAGGACCGTGTGTGCGATGGGGTCGGGGTTTCCACGGCCCTGTCGG

Function

symbol description
med20 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED20 (mediator complex subunit 20).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 20

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K13528 MED20; mediator of RNA polymerase II transcription subunit 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014026 True 1774 mRNA 0.53 4 49703711 49706258

Neighbor

gene id symbol gene type direction distance location
AMCG00014027 NA coding upstream 6691 49695266 ~ 49697020 (+)
AMCG00014019 NA coding upstream 15054 49686808 ~ 49688657 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding upstream 21291 49680521 ~ 49682420 (+)
AMCG00014018 celsr2,LOC106565652 coding upstream 29960 49653648 ~ 49673751 (+)
AMCG00014020 NA coding upstream 50549 49647798 ~ 49653162 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 11256 49717514 ~ 49728992 (+)
AMCG00014030 NA coding downstream 30156 49736414 ~ 49738159 (+)
AMCG00014037 NA coding downstream 64335 49770593 ~ 49771894 (+)
AMCG00014031 NA coding downstream 65903 49772161 ~ 49772784 (+)
AMCG00014040 NA coding downstream 131167 49837425 ~ 49842315 (+)
G48449 NA non-coding upstream 23835 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 218752 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 247013 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 249839 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 591628 49068105 ~ 49112083 (+)
G48460 NA non-coding downstream 23413 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 47326 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 86948 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 151222 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 164848 49871106 ~ 49873377 (+)
G48455 NA other upstream 183 49703078 ~ 49703528 (+)
G48454 NA other upstream 1768 49701251 ~ 49701943 (+)
G48453 NA other upstream 4089 49698620 ~ 49699622 (+)
G48451 NA other upstream 11350 49689672 ~ 49692361 (+)
AMCG00014021 NA other upstream 83684 49613701 ~ 49620027 (+)
AMCG00014032 usp49 other downstream 585 49706843 ~ 49717428 (+)
G48457 NA other downstream 16768 49723026 ~ 49723876 (+)
AMCG00014028 NA other downstream 33054 49739312 ~ 49749169 (+)
G48464 NA other downstream 35594 49741852 ~ 49742514 (+)
AMCG00014038 NA other downstream 101890 49808148 ~ 49813985 (+)

Expression


Co-expression Network