AMCG00014032 (usp49)


Basic Information

Item Value
gene id AMCG00014032
gene name usp49
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49706843 ~ 49717428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014032
ATGGCGCGCCCGCACAGACCCGCACCGGGACGCAGAACGCCGGGTTCTAAACGGCCCACACGCCCCGCACCGCGCAGCCCGGCGGACTTTCGCGCCGCTCAAAGTTTCCGCGCAGAGCCGCCTCTCTCCTGCGGGCGCCCAGGGACTGCAATCCGGCTGACCTCCTGTTGTTCCGGGCTGCGCTTTGTTCGGCTCTCGGAGGAAAGTTTGCCCCAGTCCGCGCTGTTGCCCCGTGCCCACGGAGCGGCTGCCCGGCCCGTCGCCCGAGCGCTGCCGGCGCAGAGGGGCAGGAGCCCGGAGAATTGCCGAGCAGCCCGCGGTCTTTGTTCCGGAGTTTTCCCAAACGATGAGGAGGGTGCCGGGTCTGTTGAGCAGTGTGTCCTGAGGCTCCCGAGAGGCTGCGATGGTGACGGCTCGGTCCCCGGTGTCACAGTGTACCGGGTCCCTGTCCCACCTGAGCAGCCCTGATCGAGAGCGCAGGCCTTAGCCGAGTGATGGACCGCTGTAAACACGTGGGCCGGCTGCGGCTGGCGCAGGACCACTCCATCCTCAACCCGCAGAAGTGGCGCTGTGTGGACTGCCTGACCACGGAGTCGGTGTGGGCCTGCCTGAAGTGCTCCCACGTGGCCTGCGGCCGCTACATGGAGGAGCATGCACTGCGGCACTTCCAGGAGTCGCGCCACCCGCTGGCCATGGCGGTACGCGAGCTGGACGTGTTCTGCTACGCCTGTGGCGACTACGTGCTGAACGACAACGCTGAGGGTGACCTGAAGCTGCTGCGGGGGGCGCTCTCCACGGTGCGTGGCCCGGGGGGGTGCGGTGACCCAGCACGACCCGGCCGCCGCAGCCTGCGCTCGCTGGCCTTGGGGGACGGCCCCTCCGGCGCCAGCAACGACCCAGGGGGGCCCAGGC
>TU60542
AGCTCGCGCGTGCGGATGATGGCGGTAAATAAAAGCCCCGCTCGCGCAGCGCCCGCACAGACCCGCACCGGGACGCAGAACGCCGGGTTCTAAACGGCCCACACGCCCCGCACCGCGCAGCCCGGCGGACTTTCGCGCCGCTCAAAGTTTCCGCGCAGAGCCGCCTCTCTCCTGCGGGCGCCCAGGGACTGCAATCCGGCTGACCTCCTGTTGTTCCGGGCTGCGCTTTGTTCGGCTCTCGGAGGAAAGTTTGCCCCAGTCCGCGCTGTTGCCCCGTGCCCACGGAGCGGCTGCCCGGCCCGTCGCCCGAGCGCTGCCGGCGCAGAGGGGCAGGAGCCCGGAGAATTGCCGAGCAGCCCGCGGTCTTTGTTCCGGAGGTCAGTTTTCCCAAACGATGAGGAGGGTGCCGGGTCTGTTGAGCAGTGTGTCCTGAGGCTCCCGAGAGGCTGCGATGGTGACGGCTCGGTCCCCGGTGTCACAGTGTACCGGGTCCCTGTCCCACCTGAGCAGCCCTGATCGAGAGCGCAGGCCTTAGCCGAGTGATGGACCGCTGTAAACACGTGGGCCGGCTGCGGCTGGCGCAGGACCACTCCATCCTCAACCCGCAGAAGTGGCGCTGTGTGGACTGCCTGACCACGGAGTCGGTGTGGGCCTGCCTGAAGTGCTCCCACGTGGCCTGCGGCCGCTACATGGAGGAGCATGCACTGCGGCACTTCCAGGAGTCGCGCCACCCGCTGGCCATGGCGGTACGCGAGCTGGACGTGTTCTGCTACGCCTGTGGCGACTACGTGCTGAACGACAACGCTGAGGGTGACCTGAAGCTGCTGCGGGGGGCGCTCTCCACGGTGCGTGGCCCGGGGGGGTGCGGTGACCCAGCACGACCCGGCCGCCGCAGCCTGCGCTCGCTGGCCTTGGGGGACGGCCCCTCCGGCGCCAGCAACGACCCAGGGGGGCCCAGGCCCGCGCTGCAGACGGCGCTGCGGCACCGGCGCCAGGTCCTGCTGGGCAAGGCGCTACGGGCGTGGTTTGGGCGCAGCTCGTATGGGCGGCACCGTCTGGAGCAGCAGCGtcagcagcaggagcaggagcagcgCAAGGAGGAGCTGCGGCGCCGGCGGCGGGAGGTGAAGCGGCGACTGCTGGAAGAGCTGGCCAGCTCCCCCCCCCGCAAGAGCGCCCGGCTGCTCACGCAGGCGCCGCGCACCGCCGCCATCATCCCACGCAAGTTCCGCGACCCTCCCGAGCGCACGCCGCCGCCCTCCCTGCTGGGGCTCTCGCGCCGCTCGCTCGGTGATGGCAACACCGCCAAGCTGCGCCGCTACTACTCCTCGTACCCGCGCAGGAAGTTGGCGCCGGGTGTGACGGGGCTGCGCAACCTGGGCAACACCTGCTACATGAACTCCATCCTGCAGGTGCTCAGCCACCTGCAGAAGTTCCGCGAGTGCTTCCTCACTCTGGACCTGTGCGAGACCGAGGAGCTGTTGGCCCAGAGCCGGCCGCGCAGCGG

Function

symbol description
usp49 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human USP49 (ubiquitin specific peptidase 49).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014032 False 912 mRNA 0.70 4 49706861 49716881
TU60542 True 1507 TUCP 0.70 3 49706843 49717428

Neighbor

gene id symbol gene type direction distance location
AMCG00014026 med20 coding upstream 585 49703711 ~ 49706258 (+)
AMCG00014027 NA coding upstream 9823 49695266 ~ 49697020 (+)
AMCG00014019 NA coding upstream 18186 49686808 ~ 49688657 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding upstream 24423 49680521 ~ 49682420 (+)
AMCG00014018 celsr2,LOC106565652 coding upstream 33092 49653648 ~ 49673751 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 86 49717514 ~ 49728992 (+)
AMCG00014030 NA coding downstream 18986 49736414 ~ 49738159 (+)
AMCG00014037 NA coding downstream 53165 49770593 ~ 49771894 (+)
AMCG00014031 NA coding downstream 54733 49772161 ~ 49772784 (+)
AMCG00014040 NA coding downstream 119997 49837425 ~ 49842315 (+)
G48449 NA non-coding upstream 26967 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 221884 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 250145 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 252971 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 594760 49068105 ~ 49112083 (+)
G48460 NA non-coding downstream 12243 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 36156 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 75778 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 140052 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 153678 49871106 ~ 49873377 (+)
G48455 NA other upstream 3315 49703078 ~ 49703528 (+)
G48454 NA other upstream 4900 49701251 ~ 49701943 (+)
G48453 NA other upstream 7221 49698620 ~ 49699622 (+)
G48451 NA other upstream 14482 49689672 ~ 49692361 (+)
AMCG00014021 NA other upstream 86816 49613701 ~ 49620027 (+)
G48457 NA other downstream 5598 49723026 ~ 49723876 (+)
AMCG00014028 NA other downstream 21884 49739312 ~ 49749169 (+)
G48464 NA other downstream 24424 49741852 ~ 49742514 (+)
AMCG00014038 NA other downstream 90720 49808148 ~ 49813985 (+)
G48566 NA other downstream 196501 49913929 ~ 49914542 (+)

Expression


Co-expression Network