AMCG00014034 (taf8,LOC106572622,LOC107756368)


Basic Information

Item Value
gene id AMCG00014034
gene name taf8,LOC106572622,LOC107756368
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49689679 ~ 49694164 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014034
GCGGGCCACGCAGAACGTGAAGATGGCGGACCCTGCTGTAGTGGGGAGCGGGGCGCTCGTCACAGGATCGCGCTCCTCCAGTGGGAAGAGCTCGTCCAGCGCGGCGGAGAACTACCAGCTGGCGCGCCGGCGCACCCTGCAGGTGGTGGTGAGTTCGCTGCTCACAGAGTCGGGCTTCGAGGCGTCGGAGAGGGCGGCCGTGGAGTCGCTCACAGAGATGATCCAGAGCTACATCTCGGAGGTGGGCCGCTGTGCCAAGGCGTACTGTGAACACACGGCCCGGACACAGCCCACGCTGTCCGATGTTGTCGTCACCCTGGTGGAGATGGGATTCAATGTGGACACGCTGCCCGTGTACGCCAAGCGCTCGCAAAGGATGGTCATCACTGCACCGCCGGTGACCAACCCCCCTGTGGTGCCCAGGGCGCTGACGGCTGGGCAGAAGCGCACGCACCCCCATCACATCCCCAGCCACTTCCCCGACTTCCCCGACCCCCACACCTACATCAAGACACCGACGTTCCGGGAGCCGGTGTCGGAGTACCAGGTGGTGCGTGAGAAAGCGGCGACGCAGCGGCGGGATGTGGAGCGCGCTCTGACACGCTTCATGGCCAAGACCGGAGAGACACAGAGCCTGTTCAAGGATGACATCACCGCCTTCCCCCTGATCGCAGCGAGGCCCAGCTCCATCCCCTACCTGAGCGCCCTGCTGCCGTcagagctggagctgcagcagctggaggagaCGGACTCCTCGGAGCAGGACGACCAGACCGACACCGAGAACACGCCTGGGGGCATTGGCAACGACGAGCCAGGTGCCGACAAGGAGAACGCCATGCTGCCACAGGGGGGCACCCTGCCGCAGGGCAAGGCCAGTGAGGAGAACCTCATCGACAACCCATACCTGCGGCCTGTCAAGAAGCCCAAAGCGTGCGGCCGTGCCGTGATGCCCCTCGTCTTCAGACCAGCAGGGTCTCCTCCCCGCTCGTCTCCTGGGAGGGGCACCGGGGCCCGGTGATCTCCCCCCGCACAGCCCCGTCCTCTCCCTGGAGGAGACCACCGCTCCCAGTGACTGGCTCCGACTCCTGCTCTGCACTGGTTTCCTGCCTGAGTCGCTGGGTGAATCCTGTGACATCACCTGTGACGGGCCGCTGCGCTCCAAGGCGCCGGGCAGTTTGTGTCTCTGGCCAAAAgtgaaagtatgtttttttttttttttttttaatccatcccttgaaatatgtgtaaatgtatataaatatatatttctggttGACTTTTGTTTATTCCTGATTGAAAATAtgtcatattttttgtaaattagataagaaaaga

Function

symbol description
taf8 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 8-like isoform X1

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K14649 TAF8; transcription initiation factor TFIID subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014034 True 1338 mRNA 0.61 9 49689679 49694164

Neighbor

gene id symbol gene type direction distance location
AMCG00014024 NA coding downstream 9317 49678320 ~ 49680362 (-)
AMCG00014023 NA coding downstream 82485 49595783 ~ 49607194 (-)
AMCG00014012 NA coding downstream 130919 49557804 ~ 49558760 (-)
AMCG00014011 NA coding downstream 167059 49505466 ~ 49522620 (-)
AMCG00014006 NA coding downstream 203237 49482042 ~ 49486442 (-)
AMCG00014035 NA coding upstream 3697 49697861 ~ 49703373 (-)
AMCG00014036 NA coding upstream 56304 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 89108 49783272 ~ 49788746 (-)
AMCG00014048 NA coding upstream 97179 49791343 ~ 49794766 (-)
AMCG00014047 NA coding upstream 102682 49796846 ~ 49804601 (-)
G48494 NA non-coding downstream 13929 49663092 ~ 49675750 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding downstream 61912 49623810 ~ 49627767 (-)
G48437 NA non-coding downstream 66488 49622097 ~ 49623191 (-)
G48433 NA non-coding downstream 70724 49618277 ~ 49618955 (-)
G48430 NA non-coding downstream 75705 49613696 ~ 49613974 (-)
G48508 NA non-coding upstream 31571 49725735 ~ 49726249 (-)
G48509 NA non-coding upstream 32124 49726288 ~ 49727007 (-)
G48512 NA non-coding upstream 39745 49733909 ~ 49734172 (-)
G48517 NA non-coding upstream 54425 49748589 ~ 49749282 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 191049 49494727 ~ 49498630 (-)
G48373 NA other downstream 204912 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 868523 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 1210102 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1314583 48366043 ~ 48375096 (-)
G48506 NA other upstream 25601 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 27582 49721746 ~ 49724237 (-)
G48510 NA other upstream 34340 49728504 ~ 49729055 (-)
G48516 NA other upstream 50782 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 170158 49864322 ~ 49930152 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location