AMCG00014043 (tmcc2)


Basic Information

Item Value
gene id AMCG00014043
gene name tmcc2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49864322 ~ 49930152 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014043
ATGCACGAAAATGAGAGCAAGCAGGGGGTCTTCCTGCCACACTTTATATCCCGGGACAGCCTGGAAACAAGGATTGTGGCAGCACAGAAAACCAGTGATGGAGGGAAGCGTGATGTGAAGGAGGGCTGGAGGGGGCAGGAGGGACGGGAGGAGTCTGGGGGTGGCAGGAGGGAGAGGTACGGACTGGAGAAGGGGGAGGTGAGCACGCTGGGGCTTCCCCCCGCTGCCAGCCACGGCGGCTCCGATGGCAACATCAGCTTGGACGTCCCCGAGGCGCCGGACCCCCAGCGCACGCGTGCCGCCATCGAGCACCTGCAGCAGAAGATCCTGAAGATCACAGAGCAGATCCGCATCGAGCAGGAGGCGCGGGACGAGAACGTGGCCGAGTACCTGAAGCTCGCGCACAACGCCGACAAGCAGCAGGCCTCGCGCATCAAGCAGGTCTTCGAGAAGAAGAACCAGAAGTCGGCGCAGACCATCTCGCACCTGCACAAGAAGCTTGAGCACTACCACAAGAAGCTCAAGGAGATTGAGCAGGTGCAGCCCCTGGGACAGaatGGGCCATCTCGGCAGCCGAAGGACGTGCTGCGGGACATGCAGCAGGGCCTGAAGGACGTGGGCGCCAACATGCGTGCAGGCATCAGCGGCTTCGGCGGCGGCGTGGTGGAGGGCGTGAAGGGCAGTGTGTCGGCGCTGTCGCACACGGCCGTGGTGTCTAAGCCGCGCGAGTTCGCCAGCCTGATCCGCAACAAGTTCGGCAGCGCGGACAACATTGCACACCTGAAGGACGCGCTGGAAGACCCGCAGCCTGAGGAGGCGCAGCGCACGCTCAGCGGCAGCGCCACGCTGGTATCCAGCCCCAAGTACGGCAGCGACGACGAGTGCTCCAGTGCCACCTCCGGCTCGGCTGCCGGCAGCACCTccggggcgggggggggcggGCCGGGCCCCGGCATGGGCAGCCCCAAGTCCAACACCCTGGACCagcacccacccccccacagctCCTGGGACACGCTGCTGGAGGAGCTGCGCGAGATCAAGGCCAGCCAGGTGCATCTGGAGGACGCCATTGAGGACATGAAGACGCAGCTGCAGAGGGACTACTCCTACATGACGCAGTGCCTGCAGGAGGAGAGATACAGGTGA
>TU60684
atttacaagttgccacagagagagacaggagagtacagCTGGAGAAGGGGGAGGTGAGCACGCTGGGGCTTCCCCCCGCTGCCAGCCACGGCGGCTCCGATGGCAACATCAGCTTGGACGTCCCCGAGGCGCCGGACCCCCAGCGCACGCGTGCCGCCATCGAGCACCTGCAGCAGAAGATCCTGAAGATCACAGAGCAGATCCGCATCGAGCAGGAGGCGCGGGACGAGAACGTGGCCGAGTACCTGAAGCTCGCGCACAACGCCGACAAGCAGCAGGCCTCGCGCATCAAGCAGGTCTTCGAGAAGAAGAACCAGAAGTCGGCGCAGACCATCTCGCACCTGCACAAGAAGCTTGAGCACTACCACAAGAAGCTCAAGGAGATTGAGCAGaatGGGCCATCTCGGCAGCCGAAGGACGTGCTGCGGGACATGCAGCAGGGCCTGAAGGACGTGGGCGCCAACATGCGTGCAGGCATCAGCGGCTTCGGCGGCGGCGTGGTGGAGGGCGTGAAGGGCAGTGTGTCGGCGCTGTCGCACACGGCCGTGGTGTCTAAGCCGCGCGAGTTCGCCAGCCTGATCCGCAACAAGTTCGGCAGCGCGGACAACATTGCACACCTGAAGGACGCGCTGGAAGACCCGCAGCCTGAGGAGGCGCAGCGCACGCTCAGCGGCAGCGCCACGCTGGTATCCAGCCCCAAGTACGGCAGCGACGACGAGTGCTCCAGTGCCACCTCCGGCTCGGCTGCCGGCAGCACCTccggggcgggggggggcggGCCGGGCCCCGGCATGGGCAGCCCCAAGTCCAACACCCTGGACCagcacccacccccccacagctCCTGGGACACGCTGCTGGAGGAGCTGCGCGAGATCAAGGCCAGCCAGGTGCATCTGGAGGACGCCATTGAGGACATGAAGACGCAGCTGCAGAGGGACTACTCCTACATGACGCAGTGCCTGCAGGAGGAGAGATACAGGT

Function

symbol description
tmcc2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014043 True 1149 mRNA 0.65 4 49864322 49865656
TU60684 False 984 TUCP 0.65 3 49864324 49930152

Neighbor

gene id symbol gene type direction distance location
AMCG00014042 dstyk coding downstream 32951 49820480 ~ 49831371 (-)
AMCG00014045 NA coding downstream 46046 49814049 ~ 49818276 (-)
AMCG00014047 NA coding downstream 59721 49796846 ~ 49804601 (-)
AMCG00014048 NA coding downstream 69556 49791343 ~ 49794766 (-)
AMCG00014046 NA coding downstream 75576 49783272 ~ 49788746 (-)
AMCG00014044 NA coding upstream 1008 49931160 ~ 49934490 (-)
G48517 NA non-coding downstream 115040 49748589 ~ 49749282 (-)
G48512 NA non-coding downstream 130150 49733909 ~ 49734172 (-)
G48509 NA non-coding downstream 137315 49726288 ~ 49727007 (-)
G48508 NA non-coding downstream 138073 49725735 ~ 49726249 (-)
G48494 NA non-coding downstream 188572 49663092 ~ 49675750 (-)
G48516 NA other downstream 116771 49744946 ~ 49747551 (-)
G48510 NA other downstream 135267 49728504 ~ 49729055 (-)
AMCG00014033 NA other downstream 140085 49721746 ~ 49724237 (-)
G48506 NA other downstream 142796 49719765 ~ 49721526 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 365692 49494727 ~ 49498630 (-)

Expression


Co-expression Network