AMCG00014048


Basic Information

Item Value
gene id AMCG00014048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49791343 ~ 49794766 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014048
atggctttgaaaatgtttctcctCCTGCTGATGTCCTTGTCTCTGTGTGCCGGCCTCAAAAGGGTGGCTCTCAGCAGACAGCGATCTCAGCGGCACAAGATGAGGGCGAGAGGGACTTTGGCCCAGTTCTGGAACTCTCACCAGCTTGACATGATCCAGTACAGCGATGCCTGCCCCACCGCCACGCAGGCCAGCGAGCCGCTCGTCAATTACATGGATGCAGAGTTTTTTGGGAAGATCTCTATTGGCACACCACCGCAGAACTTCACAGTGATATTTGACACTGGCTCCTCTAACCTGTGGGTCCCCTCTGCCCTGTGTGACAGCCATGCCTGCAAAATCCACAATAGATACCATTCCTCTCAGTCTACAACCTATGAGCTGGATGGCCGTCCTTTCCACATACAGTATGGCACTGGAAGCCTGACTGGCATTCTGGCATATGACCTGGTGATGGTGGAAGGGATGGCTGTGTCCCATCAGAAGTTCGGCGAGAGTGTGAGCGAGCCGGGCAGCACCTTTGTGGATGCTGACTTTGATGGGATCCTGGGTCTTGGATACCCGTCCATTGCAGCAGCGGGCGCCACGCCTGTGTTTGACAGCATGATGGCACAGGGCCTCCTAGACCTGCCCCTCTTCAGTGTTTACCTCAACAGTGTGAAGGTGAACGGGCAGGTCCGGTTCTGTGAGGATGGGTGCCAGGCCATCGTGGACACCGGGACCTCCCTGCTGACAGGACCCACAGCTGACATCAGCGCCCTGCTGGCAGAGCTGGGTGCTGAAGCTGCGGGAGATGGGACGtacacTGTGGCCTGCAGCAGCTTCCCCTCGCTCCCTGATGTCACATTCACCATCGGCGGGGTGGAGTTCCCGCTGACTCCCGCAGCCTACATACAGACAgagGAACTGATGGGAGAGGCAGTGGTGTGTATGGCAGGCTTTCAGGGCATGGATATCCCCCCTCCAGACGGGCCCCTGTGGATCCTGGGAGACGTGTTCATCGGCCAGTTCTACTCCGTGTTTAATAGGGGCAGCAATCAGGTGGGCTTGGCCAAGGCTGTGCCCTGA

Function

GO: NA

KEGG:

id description
K01382 CTSE; cathepsin E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014048 True 1068 mRNA 0.57 8 49791343 49794766

Neighbor

gene id symbol gene type direction distance location
AMCG00014046 NA coding downstream 2597 49783272 ~ 49788746 (-)
AMCG00014036 NA coding downstream 34102 49750468 ~ 49757241 (-)
AMCG00014035 NA coding downstream 87970 49697861 ~ 49703373 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding downstream 97179 49689679 ~ 49694164 (-)
AMCG00014024 NA coding downstream 110981 49678320 ~ 49680362 (-)
AMCG00014047 NA coding upstream 2080 49796846 ~ 49804601 (-)
AMCG00014045 NA coding upstream 19283 49814049 ~ 49818276 (-)
AMCG00014042 dstyk coding upstream 25714 49820480 ~ 49831371 (-)
AMCG00014041 NA coding upstream 94520 49889286 ~ 49901963 (-)
AMCG00014044 NA coding upstream 136394 49931160 ~ 49934490 (-)
G48517 NA non-coding downstream 42061 49748589 ~ 49749282 (-)
G48512 NA non-coding downstream 57171 49733909 ~ 49734172 (-)
G48509 NA non-coding downstream 64336 49726288 ~ 49727007 (-)
G48508 NA non-coding downstream 65094 49725735 ~ 49726249 (-)
G48494 NA non-coding downstream 115593 49663092 ~ 49675750 (-)
G48516 NA other downstream 43792 49744946 ~ 49747551 (-)
G48510 NA other downstream 62288 49728504 ~ 49729055 (-)
AMCG00014033 NA other downstream 67106 49721746 ~ 49724237 (-)
G48506 NA other downstream 69817 49719765 ~ 49721526 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 292713 49494727 ~ 49498630 (-)
AMCG00014043 tmcc2 other upstream 69556 49864322 ~ 49930152 (-)
G48570 tmcc2,LOC106583086,LOC106565656 other upstream 76227 49870993 ~ 49918397 (-)

Expression


Co-expression Network