G38305



Basic Information


Item Value
gene id G38305
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 596608 ~ 596818 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU47775
CCAGTTTGTGACAGCGATCACCTTCTCCAGGTCCATGTGCACGCCGTGGGCATCGATGACGTAACCCAGGAACCCCAAGCACTGTCAGTGGAACTCACACTTCTCCACCTTGATGTACAGTACATTGCGCAGCAGACACTGGAGAACCAGTCACACCTGGGAAACGTGctcagagagggaggcagagtaAATCAGAATGTCGTCAATGTAG

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA


RNA id representative length rna type GC content exon number start site end site
TU47775 True 211 lncRNA 0.53 1 596608 596818

Neighbor


gene id symbol gene type direction distance location
AMCG00012631 NA coding downstream 5955 589227 ~ 590653 (-)
AMCG00012632 NA coding downstream 22236 557829 ~ 574372 (-)
AMCG00012624 NA coding downstream 146032 420233 ~ 450576 (-)
AMCG00012623 NA coding downstream 298483 281594 ~ 298125 (-)
AMCG00012626 NA coding downstream 401007 152662 ~ 195601 (-)
AMCG00012630 NA coding upstream 3037 599855 ~ 613207 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding upstream 148517 745335 ~ 751549 (-)
AMCG00012637 NA coding upstream 170187 767005 ~ 792382 (-)
AMCG00012638 NA coding upstream 203241 800059 ~ 816537 (-)
AMCG00012636 NA coding upstream 269313 866131 ~ 893617 (-)
G38355 NA non-coding upstream 240293 837111 ~ 840487 (-)
G38472 NA non-coding upstream 1287811 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1303942 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1398029 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 1435019 2031837 ~ 2032211 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 57017 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 982137 1578955 ~ 1817200 (-)
G38458 NA other upstream 1180036 1776854 ~ 1777221 (-)
G38490 NA other upstream 1587067 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5455546 6052364 ~ 6063817 (-)
G39487 NA other upstream 5858903 6455721 ~ 6456178 (-)

Expression



Co-expression Network