G38457


Basic Information

Item Value
gene id G38457
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1776848 ~ 1777250 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU47948
gttcataaagcagcctggatgttcttgaccacgtaggccagcccctgcgcctttatcagccgcacaacgtccgggacccccctgcctccatccagggtacccttcaccatttgcactctcttcagcctctccattttgctcccccagacaaactgaaatataattctggtcactagttttgcgacgaccttgtctggggggaagatcattCCTACGTAGAGgagtatcgggaagaggatggcctttacgaccagcaccttaccggccatcgtcaaggtccttgtgctctaGCCGTGGATCTTTCTTTGGACCTTGGATAAggcctcctcccagctccgggtgcccgtgttggtcccgttgatcgtgatccccagaaccttgatggacggcttcacagggaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47948 True 403 lncRNA 0.55 1 1776848 1777250

Neighbor

gene id symbol gene type direction distance location
AMCG00012645 plcz1 coding upstream 7145 1761257 ~ 1769703 (+)
AMCG00012633 NA coding upstream 1000100 638993 ~ 776748 (+)
AMCG00012629 NA coding upstream 1217846 542979 ~ 559002 (+)
AMCG00012627 gys2,LOC106566433 coding upstream 1269185 477795 ~ 507663 (+)
AMCG00012622 NA coding upstream 1652591 21980 ~ 124257 (+)
AMCG00012644 NA coding downstream 1357 1778607 ~ 1807616 (+)
AMCG00012647 NA coding downstream 123518 1900768 ~ 1901673 (+)
AMCG00012650 NA coding downstream 488323 2265573 ~ 2295248 (+)
AMCG00012653 NA coding downstream 556625 2333875 ~ 2359147 (+)
AMCG00012654 NA coding downstream 581936 2359186 ~ 2360925 (+)
G38379 NA non-coding upstream 688656 1087869 ~ 1088192 (+)
G38364 pde3a non-coding upstream 856724 919865 ~ 920124 (+)
G38363 NA non-coding upstream 883262 893311 ~ 893586 (+)
G38359 NA non-coding upstream 910465 866137 ~ 866383 (+)
G38356 NA non-coding upstream 923831 848039 ~ 853017 (+)
G38474 NA non-coding downstream 217594 1994844 ~ 1995085 (+)
G38484 NA non-coding downstream 322874 2100124 ~ 2100390 (+)
G38489 NA non-coding downstream 406641 2183891 ~ 2184138 (+)
G38503 NA non-coding downstream 519442 2296692 ~ 2297179 (+)
G38505 NA non-coding downstream 637271 2414521 ~ 2431408 (+)
AMCG00012641 NA other upstream 195460 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 937582 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 2406625 4183875 ~ 4251594 (+)
G38954 NA other downstream 2593063 4370313 ~ 4373574 (+)
G39297 NA other downstream 3775167 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 4030596 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 4275898 6053148 ~ 6056832 (+)

Expression


Co-expression Network