G38489


Basic Information

Item Value
gene id G38489
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2183891 ~ 2184138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU47983
tgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccatgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47983 True 248 lncRNA 0.53 1 2183891 2184138

Neighbor

gene id symbol gene type direction distance location
AMCG00012647 NA coding upstream 282218 1900768 ~ 1901673 (+)
AMCG00012644 NA coding upstream 376275 1778607 ~ 1807616 (+)
AMCG00012645 plcz1 coding upstream 414188 1761257 ~ 1769703 (+)
AMCG00012633 NA coding upstream 1407143 638993 ~ 776748 (+)
AMCG00012629 NA coding upstream 1624889 542979 ~ 559002 (+)
AMCG00012650 NA coding downstream 81435 2265573 ~ 2295248 (+)
AMCG00012653 NA coding downstream 149737 2333875 ~ 2359147 (+)
AMCG00012654 NA coding downstream 175048 2359186 ~ 2360925 (+)
AMCG00012652 NA coding downstream 177200 2361338 ~ 2391704 (+)
AMCG00012651 NA coding downstream 213351 2397489 ~ 2404357 (+)
G38484 NA non-coding upstream 83501 2100124 ~ 2100390 (+)
G38474 NA non-coding upstream 188806 1994844 ~ 1995085 (+)
G38457 NA non-coding upstream 406641 1776848 ~ 1777250 (+)
G38379 NA non-coding upstream 1095699 1087869 ~ 1088192 (+)
G38364 pde3a non-coding upstream 1263767 919865 ~ 920124 (+)
G38503 NA non-coding downstream 112554 2296692 ~ 2297179 (+)
G38505 NA non-coding downstream 230383 2414521 ~ 2431408 (+)
G38526 NA non-coding downstream 253959 2438097 ~ 2440033 (+)
G38530 NA non-coding downstream 265645 2449783 ~ 2468853 (+)
G38531 LOC103376870 non-coding downstream 272619 2456757 ~ 2532789 (+)
AMCG00012641 NA other upstream 602503 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 1344625 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 1999737 4183875 ~ 4251594 (+)
G38954 NA other downstream 2186175 4370313 ~ 4373574 (+)
G39297 NA other downstream 3368279 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 3623708 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 3869010 6053148 ~ 6056832 (+)

Expression


Co-expression Network