G38530


Basic Information

Item Value
gene id G38530
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2449783 ~ 2468853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48030
CTACAACAGGGCCAGCGTTGACCCCGTATTTCATCAGTTGGTCCTTCAGGTCCTCATCGCTTAGCTCTGTGACATCCAGGTCCTCTGGCCGCGGCTTGTCCGTCTTCCTTGTGGCTTTCTTACCCTTCCGGAGCGGTTTTTGTTGGCCACCACGGGGGGAGGTAGCTCGTCATCGCTGGAAAAAGTCTCCGGAGGCATTTTATTCTTCTTGGGTTTGTTTTGGACGGTGAGGTTTTGCAAGTAGAGCTGAACATAGACGTCTTTCCTCTGCTCGCCGCTCGGGAGCACCACGTTATTGGCCAGCAGCTCGCTCTTTAGTTTCTCCTTGGTGAGGACCGACGGGTCTTCGAGAAATTCCGACATGTCCGCGATGCTGCTCGTCTGCGATCGATTCTTTGATGAACCTACACAGCGCTGAACCAGCTCGCTTCGCGTCGCTAGCAAGGATAGAGGAGGAACAAGGAAGGAAGGCAGGGAATAACGTGCGACTGGCGCCTCTTGTTGGAGCAAAATAAGAAAGcgagaaaataatgtataaatttaGCACCGTTCAAATATTTTCTGCCTGCTCGACTCTCTTCTACCTACCCGAACGTACTCTGTTGGATATGCACAAATAGTTTAATTCTACCTTTTtcggttatgttttgtttttattgtgtgttaaaAAGCACACTAGTCCCGGCCCACTGGCTACAAGCTACCGCGGCGACAGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48030 True 719 lncRNA 0.50 2 2449783 2468853

Neighbor

gene id symbol gene type direction distance location
AMCG00012651 NA coding upstream 45426 2397489 ~ 2404357 (+)
AMCG00012652 NA coding upstream 58079 2361338 ~ 2391704 (+)
AMCG00012654 NA coding upstream 88858 2359186 ~ 2360925 (+)
AMCG00012653 NA coding upstream 90636 2333875 ~ 2359147 (+)
AMCG00012650 NA coding upstream 154535 2265573 ~ 2295248 (+)
AMCG00012657 LOC107725508 coding downstream 31205 2500058 ~ 2540181 (+)
AMCG00012658 NA coding downstream 343145 2811998 ~ 2851213 (+)
AMCG00012659 guca1a coding downstream 708545 3177398 ~ 3181902 (+)
AMCG00012660 NA coding downstream 715327 3184180 ~ 3184551 (+)
AMCG00012661 NA coding downstream 717157 3186010 ~ 3186423 (+)
G38526 NA non-coding upstream 9750 2438097 ~ 2440033 (+)
G38505 NA non-coding upstream 18375 2414521 ~ 2431408 (+)
G38503 NA non-coding upstream 152604 2296692 ~ 2297179 (+)
G38489 NA non-coding upstream 265645 2183891 ~ 2184138 (+)
G38484 NA non-coding upstream 349393 2100124 ~ 2100390 (+)
G38551 NA non-coding downstream 148069 2616922 ~ 2617197 (+)
G38553 NA non-coding downstream 166765 2635618 ~ 2636030 (+)
G38554 NA non-coding downstream 201792 2670645 ~ 2670969 (+)
G38566 NA non-coding downstream 228989 2697842 ~ 2698321 (+)
G38568 NA non-coding downstream 229553 2698406 ~ 2698790 (+)
AMCG00012641 NA other upstream 868395 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 1610517 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 1715022 4183875 ~ 4251594 (+)
G38954 NA other downstream 1901460 4370313 ~ 4373574 (+)
G39297 NA other downstream 3083564 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 3338993 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 3584295 6053148 ~ 6056832 (+)

Expression


Co-expression Network