G38531 (LOC103376870)


Basic Information

Item Value
gene id G38531
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2456757 ~ 2532789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48033
TACATTTCAGagttatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgattaaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgactgtTGACTGAAcgttacaaccga

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48033 True 445 lncRNA 0.43 2 2456757 2532789

Neighbor

gene id symbol gene type direction distance location
AMCG00012651 NA coding upstream 52400 2397489 ~ 2404357 (+)
AMCG00012652 NA coding upstream 65053 2361338 ~ 2391704 (+)
AMCG00012654 NA coding upstream 95832 2359186 ~ 2360925 (+)
AMCG00012653 NA coding upstream 97610 2333875 ~ 2359147 (+)
AMCG00012650 NA coding upstream 161509 2265573 ~ 2295248 (+)
AMCG00012658 NA coding downstream 279209 2811998 ~ 2851213 (+)
AMCG00012659 guca1a coding downstream 644609 3177398 ~ 3181902 (+)
AMCG00012660 NA coding downstream 651391 3184180 ~ 3184551 (+)
AMCG00012661 NA coding downstream 653221 3186010 ~ 3186423 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding downstream 936281 3469070 ~ 3477927 (+)
G38526 NA non-coding upstream 16724 2438097 ~ 2440033 (+)
G38505 NA non-coding upstream 25349 2414521 ~ 2431408 (+)
G38503 NA non-coding upstream 159578 2296692 ~ 2297179 (+)
G38489 NA non-coding upstream 272619 2183891 ~ 2184138 (+)
G38484 NA non-coding upstream 356367 2100124 ~ 2100390 (+)
G38551 NA non-coding downstream 84133 2616922 ~ 2617197 (+)
G38553 NA non-coding downstream 102829 2635618 ~ 2636030 (+)
G38554 NA non-coding downstream 137856 2670645 ~ 2670969 (+)
G38566 NA non-coding downstream 165053 2697842 ~ 2698321 (+)
G38568 NA non-coding downstream 165617 2698406 ~ 2698790 (+)
AMCG00012641 NA other upstream 875369 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 1617491 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 1651086 4183875 ~ 4251594 (+)
G38954 NA other downstream 1837524 4370313 ~ 4373574 (+)
G39297 NA other downstream 3019628 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 3275057 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 3520359 6053148 ~ 6056832 (+)

Expression


Co-expression Network