G38614 (LOC108439415,LOC107680110,LOC107754377)


Basic Information

Item Value
gene id G38614
gene name LOC108439415,LOC107680110,LOC107754377
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2939855 ~ 2940082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48137
TTTATTAGGAAGGGTTTGCTGTTGAGCAGATTGGAGAACTGGTTGAGTGCCTGCTCCACTGTGGCCCGTCTTGGCTCTGGGATGTCGATCTTGCCCGTGATCATCACGTCGTTTGCCCCGTCCTTGGAGGGCAAGAAGAAGACGCGGTCGGTGTAGGTCTTATAGTCCAAGAAAGGAATCCGTGCCTCACTCAGGTCACTGGTGTGGTCCTCCATCTCAATCATCAAG

Function

NR:

description
PREDICTED: plexin-B2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48137 True 228 lncRNA 0.53 1 2939855 2940082

Neighbor

gene id symbol gene type direction distance location
AMCG00012658 NA coding upstream 88642 2811998 ~ 2851213 (+)
AMCG00012657 LOC107725508 coding upstream 399674 2500058 ~ 2540181 (+)
AMCG00012651 NA coding upstream 535498 2397489 ~ 2404357 (+)
AMCG00012652 NA coding upstream 548151 2361338 ~ 2391704 (+)
AMCG00012654 NA coding upstream 578930 2359186 ~ 2360925 (+)
AMCG00012659 guca1a coding downstream 237316 3177398 ~ 3181902 (+)
AMCG00012660 NA coding downstream 244098 3184180 ~ 3184551 (+)
AMCG00012661 NA coding downstream 245928 3186010 ~ 3186423 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding downstream 528988 3469070 ~ 3477927 (+)
AMCG00012669 NA coding downstream 646302 3586384 ~ 3611175 (+)
G38613 NA non-coding upstream 633 2938991 ~ 2939222 (+)
G38612 NA non-coding upstream 2961 2936557 ~ 2936894 (+)
G38611 NA non-coding upstream 4420 2934276 ~ 2935435 (+)
G38568 NA non-coding upstream 241065 2698406 ~ 2698790 (+)
G38566 NA non-coding upstream 241534 2697842 ~ 2698321 (+)
G38615 NA non-coding downstream 768 2940850 ~ 2941217 (+)
G38616 NA non-coding downstream 2054 2942136 ~ 2942418 (+)
G38617 NA non-coding downstream 2653 2942735 ~ 2987981 (+)
G38673 NA non-coding downstream 181164 3121246 ~ 3124370 (+)
G38680 NA non-coding downstream 193977 3134059 ~ 3134271 (+)
AMCG00012641 NA other upstream 1358467 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2100589 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 1243793 4183875 ~ 4251594 (+)
G38954 NA other downstream 1430231 4370313 ~ 4373574 (+)
G39297 NA other downstream 2612335 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 2867764 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 3113066 6053148 ~ 6056832 (+)

Expression


Co-expression Network