G38686


Basic Information

Item Value
gene id G38686
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3155706 ~ 3156240 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48217
GTTTTTGCTGGTCTGCACTGAGAAtctcctcctgcagcagctgcagctcctGTGTGCGTGCGCGGAGGGCATCCTGGTGTTCCTTGGCCGCCTGCAGTGCTCTCTGCAGCTCTGGTTCTGGGGGAGGGCCTCGAGCTGCACCCAGCAGCTCCTCCTCATGCTTGCGCACCTGTTCCTCAAAACACACATCCTTCTCACACACCACGGACTGCAGAACACGCAGCTGGAGGGAGGGGTGCACAGGTGTTATATGCTTGGGACATGCTGCATAAAGGTTTTTTATGTGTTCATCTACATACAGTAATAGTGCATAACTGATCCTCAGTATACTGAGCACTGACAACACTAAGtaacaatttttgttcctgggtagtaagtgttattcctaattgcttaattgcttatGTATCAAAAGTATAGacaatggctattattccccacaaactttgcttttgtgaccaggacagtgatattttgaaatatacctatttccaatgagaaaatgggtgaaaacaacatatgaatccaaattaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48217 True 535 lncRNA 0.46 1 3155706 3156240

Neighbor

gene id symbol gene type direction distance location
AMCG00012658 NA coding upstream 304493 2811998 ~ 2851213 (+)
AMCG00012657 LOC107725508 coding upstream 615525 2500058 ~ 2540181 (+)
AMCG00012651 NA coding upstream 751349 2397489 ~ 2404357 (+)
AMCG00012652 NA coding upstream 764002 2361338 ~ 2391704 (+)
AMCG00012654 NA coding upstream 794781 2359186 ~ 2360925 (+)
AMCG00012659 guca1a coding downstream 21158 3177398 ~ 3181902 (+)
AMCG00012660 NA coding downstream 27940 3184180 ~ 3184551 (+)
AMCG00012661 NA coding downstream 29770 3186010 ~ 3186423 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding downstream 312830 3469070 ~ 3477927 (+)
AMCG00012669 NA coding downstream 430144 3586384 ~ 3611175 (+)
G38683 NA non-coding upstream 10811 3144631 ~ 3144895 (+)
G38682 NA non-coding upstream 14433 3141029 ~ 3141273 (+)
G38680 NA non-coding upstream 21435 3134059 ~ 3134271 (+)
G38673 NA non-coding upstream 31336 3121246 ~ 3124370 (+)
G38617 NA non-coding upstream 167725 2942735 ~ 2987981 (+)
G38687 NA non-coding downstream 322 3156562 ~ 3158832 (+)
G38689 NA non-coding downstream 15306 3171546 ~ 3171746 (+)
G38690 NA non-coding downstream 15902 3172142 ~ 3172807 (+)
G38729 NA non-coding downstream 164374 3320614 ~ 3373694 (+)
G38742 NA non-coding downstream 273815 3430055 ~ 3431327 (+)
AMCG00012641 NA other upstream 1574318 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2316440 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 1027635 4183875 ~ 4251594 (+)
G38954 NA other downstream 1214073 4370313 ~ 4373574 (+)
G39297 NA other downstream 2396177 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 2651606 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2896908 6053148 ~ 6056832 (+)

Expression


Co-expression Network