G38743


Basic Information

Item Value
gene id G38743
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3429936 ~ 3431336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48287
cttgtagaactcaatttctgtaataactggacgcagacaccaattccaaagatataaattctcaaatttattaaaaacaaagatacaatgtagcactacactagttatacaaaaagggaaaaactaataaaaattcactcaagatcaacaaatcaaagacaaatcacttccgtgaccaaatcaacgACCATGGaatcacatatgataacacacaaaatgttacacaaaattacaaacacattgactacaataccagttAGTGAGACGAaagtgagtctctcattagtattgttagtcggacattaaataactaatgcaagttagtatttaaatcaaataacttctcgttatacatatatcagtctcatttacgtttgggtgtcgagaaagatcctatcatttcttgttaccacaattctccctaattgattactgttcaatgattaaggataggcagagccacctataatctggtgtctattaacatgtgtcaatttcagactaaacagttaaacaggaatgagaagatatttctctgcgttttttttctaaaattgtcaaacaaaacagtttaatacagcactcatttatatttaagaaaatactaaattatattacacattctaaagtttatgactcacagaataacatttctaattgatttctcaaatgtcatgaataataaactccaaacttttaaacttatctgaactttgtcgcagagaggcctctctgtcttcgggctcaaatataaacacatggcacgaggtccgtgtggtttggaacaaaggcagtccggtttggctttgtccaataacttccactcagtcgatgcacctggaagttggggtttcgtgaaagtagagtcttttccaaacagattttccactggtttgaaggcggttgtgcacaaaatcttctttgtaagcagggtttccaccgtagttacttgaagacaaagtctttgaggaaagcagggccctgttcgtttctaagtgtcaagtttcttaagactcaatagctatttaaatgactgaacactttcgtattgcagtcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcagcgcagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggctcaatgtccttctcccagtttaactcttctgttgccggcaaagacttagttggtttctggtttcCGTTCTGGCatcagagctacaggttgagctgtggcagcaagttactggttcaggtgagagagagtgatagatgccgtgcgctaccctttatacgcctgtcagatcaatagatgattggttcttgagtttgtgagattggatttcggtttcagcccccagtgtccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48287 True 1401 lncRNA 0.37 1 3429936 3431336

Neighbor

gene id symbol gene type direction distance location
AMCG00012668 NA coding downstream 8908 3349631 ~ 3421028 (-)
AMCG00012666 NA coding downstream 157653 3203154 ~ 3272283 (-)
AMCG00012662 NA coding downstream 259135 3121200 ~ 3170801 (-)
AMCG00012665 LOC105909609,LOC107680042,LOC107710670 coding downstream 329461 3087436 ~ 3100475 (-)
AMCG00012664 NA coding downstream 467447 2921701 ~ 2962489 (-)
AMCG00012670 NA coding upstream 220871 3652207 ~ 3663213 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding upstream 247343 3678679 ~ 3721400 (-)
AMCG00012672 NA coding upstream 296110 3727446 ~ 3729646 (-)
AMCG00012671 NA coding upstream 307408 3738744 ~ 3754995 (-)
AMCG00012673 LOC106910051 coding upstream 325759 3757095 ~ 3772987 (-)
G38740 reln non-coding downstream 82289 3311332 ~ 3347647 (-)
G38650 NA non-coding downstream 508274 2916028 ~ 2921662 (-)
G38581 NA non-coding downstream 638412 2778850 ~ 2791524 (-)
G38573 NA non-coding downstream 654734 2726029 ~ 2775202 (-)
G38552 NA non-coding downstream 806747 2622989 ~ 2623189 (-)
G38792 NA non-coding upstream 75501 3506837 ~ 3561850 (-)
G38791 NA non-coding upstream 123049 3554385 ~ 3638866 (-)
G38841 NA non-coding upstream 351824 3783160 ~ 3783391 (-)
G38842 NA non-coding upstream 352468 3783804 ~ 3784050 (-)
G38909 NA non-coding upstream 543017 3974353 ~ 3976596 (-)
G38490 NA other downstream 1245773 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 1612736 1578955 ~ 1817200 (-)
G38458 NA other downstream 1652715 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 2890345 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2621028 6052364 ~ 6063817 (-)
G39487 NA other upstream 3024385 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 3207144 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4460153 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5681105 9112441 ~ 9152405 (-)

Expression


Co-expression Network