G38775


Basic Information

Item Value
gene id G38775
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3618856 ~ 3619194 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48329
AGACAAAGTTCAACCTACCCTGCCAGGAGTTCATGGAGAAGTTGTCCAAAAATAGTTACTGAAAAAGATGCATTCTGCTGAAAAATATACCAATTAGGCTGCTCTTATCTAGCCAGCCAGAGTACAGAAGAATCAATACCCAGTGACCCAGAGAATGCTGCAAAATGTCTACAATTTGTTATCATTAGAACAATTgtttcactatttattttactct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48329 True 217 lncRNA 0.37 2 3618856 3619194

Neighbor

gene id symbol gene type direction distance location
AMCG00012669 NA coding upstream 7681 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 140929 3469070 ~ 3477927 (+)
AMCG00012661 NA coding upstream 432433 3186010 ~ 3186423 (+)
AMCG00012660 NA coding upstream 434305 3184180 ~ 3184551 (+)
AMCG00012659 guca1a coding upstream 436954 3177398 ~ 3181902 (+)
AMCG00012675 LOC108428417 coding downstream 266944 3886138 ~ 3900561 (+)
AMCG00012679 trabd coding downstream 515394 4134588 ~ 4158381 (+)
AMCG00012680 NA coding downstream 542306 4161500 ~ 4183082 (+)
AMCG00012687 actr6,arp6 coding downstream 694688 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 701779 4320973 ~ 4329154 (+)
G38742 NA non-coding upstream 187529 3430055 ~ 3431327 (+)
G38729 NA non-coding upstream 245162 3320614 ~ 3373694 (+)
G38690 NA non-coding upstream 446049 3172142 ~ 3172807 (+)
G38689 NA non-coding upstream 447110 3171546 ~ 3171746 (+)
G38687 NA non-coding upstream 460024 3156562 ~ 3158832 (+)
G38818 NA non-coding downstream 53280 3672474 ~ 3672714 (+)
G38824 NA non-coding downstream 120597 3739791 ~ 3744326 (+)
G38836 NA non-coding downstream 138523 3757717 ~ 3760103 (+)
G38838 NA non-coding downstream 151642 3770836 ~ 3772238 (+)
G38843 NA non-coding downstream 172282 3791476 ~ 3793774 (+)
AMCG00012641 NA other upstream 2037468 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2779590 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 564681 4183875 ~ 4251594 (+)
G38954 NA other downstream 751119 4370313 ~ 4373574 (+)
G39297 NA other downstream 1933223 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 2188652 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2433954 6053148 ~ 6056832 (+)

Expression


Co-expression Network