G38791


Basic Information

Item Value
gene id G38791
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3554385 ~ 3638866 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48345
TATTGGGCAtcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatagtacaATGACCAATGACTGAAAGGgactatttttctatttaatgttaaaatgtataaaacattatttacacaCACCAGTCCCCCATCCCTCAGTGCAGGTTAGCATTTCCCCGTAAGTGACCAAGGCTTACATTGTGGTCTGGGAGGCCTGAGCTTAACCCTTAAGCTCTCTCCATGGCAGTGGAGTGACTATGGATCACAGTATTGCCCAAGAACTTCCCTCAATCCCCACCACAGTTTAGATAAGAGGACCTCAGGCAGTCTTAGTTTTCATCTGCCTCTACCCTGGCCTCAGGGCAAACTGTCAGCTCCCACTCAGACACACTCaaatacaaacatgcacacacacccaaCATGCACAGACTCAATAAGATACACAAATCTATAGACACACATTCTGATGAAGTTCATGATGTGAGATAATACCTGAATGAGAGAACATGAGGACAAGTGTGGGACCTGGGTGTGTTCAAGACTCCGAACAGCAGACATGTCTTTacagacacatacatttattaatttaccatTTACCATAAATCTAATTCAATGGTTCACAACCCTAGTCCTGGGCACCCACTCCATCTGCAATCCCCAgtaattgaaaccttaattgaagtaataatttgcttttaaaatggatttaacTTGAATTAAGTGGAGATTTCAGGTGCCttgtatatttttagatttaacTTTCTATGGTCTGAGATTATTAATACGATCTACTTAGGTCAATTATTAGTCTCATGTGGACATTGGTAAACCACGGATCTAAttgatgtaaatgtaattttagcCAGGCAATGTAGTGGTCAGTTGCTCAATGTCTACGTTAATGTCTTTCAATTCAGGTACGATTTACCTATGTCCTGTTTAAGTGTCCCAGGAGAATGGGGTCCAGATGCCGACAATATACACTAAAattgctacacacacacacacaggactaATGATATACTGTATAGTGTATACGGTTATGTGCTACTTAgaaggtgacttacaattgttcacattatttttacccatttatGCAGATgtgttttactggagcaatctaggtgtaaagtaccttgttcaatgatacaacagcagtgtcccccactgATTGAACCCACGATCCTgtgctcaggagtccagagtcCTGACCACTGCTCCACACTGTTGCTCATACTAAATTATAAGCATTGCCAAATGAATCAGATAATGCTCCTCTTATTTAATCAAGTCAAACCTACATGACATTACAGTTCACATGATaatcacaatacaataatgCTATGCTCATCTACATTACAAAGTAATGTGATGCTAcggctttctctctctcttggtaACTGAAAGGTGGCACAACTGCAGCATACAGCGCTTACAGCAGTCCACCTTCGATTTCATGTTTTCAAGCAGCGCTTTTCTCTTCCGGTAAGTCGCAAAGACAACTGGGGGAAAATCGacgatgtatttattgtgtgtataaCAAGtcattctagatcatgtaaaatgtttacaggtctatatttttattttattgtattttatgtattttattttactgtatgtttgttgtatgtttaccagcctgtaaagcgctctgtggctaccctgcgaagggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48345 True 1766 lncRNA 0.40 3 3554385 3638866

Neighbor

gene id symbol gene type direction distance location
AMCG00012668 NA coding downstream 133357 3349631 ~ 3421028 (-)
AMCG00012666 NA coding downstream 282102 3203154 ~ 3272283 (-)
AMCG00012662 NA coding downstream 383584 3121200 ~ 3170801 (-)
AMCG00012665 LOC105909609,LOC107680042,LOC107710670 coding downstream 453910 3087436 ~ 3100475 (-)
AMCG00012664 NA coding downstream 591896 2921701 ~ 2962489 (-)
AMCG00012670 NA coding upstream 13341 3652207 ~ 3663213 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding upstream 39813 3678679 ~ 3721400 (-)
AMCG00012672 NA coding upstream 88580 3727446 ~ 3729646 (-)
AMCG00012671 NA coding upstream 99878 3738744 ~ 3754995 (-)
AMCG00012673 LOC106910051 coding upstream 118229 3757095 ~ 3772987 (-)
G38743 NA non-coding downstream 123049 3429936 ~ 3431336 (-)
G38740 reln non-coding downstream 206738 3311332 ~ 3347647 (-)
G38650 NA non-coding downstream 632723 2916028 ~ 2921662 (-)
G38581 NA non-coding downstream 762861 2778850 ~ 2791524 (-)
G38573 NA non-coding downstream 779183 2726029 ~ 2775202 (-)
G38841 NA non-coding upstream 144294 3783160 ~ 3783391 (-)
G38842 NA non-coding upstream 144938 3783804 ~ 3784050 (-)
G38909 NA non-coding upstream 335487 3974353 ~ 3976596 (-)
G38910 NA non-coding upstream 398573 4037439 ~ 4096741 (-)
G38965 NA non-coding upstream 488141 4127007 ~ 4517632 (-)
G38490 NA other downstream 1370222 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 1737185 1578955 ~ 1817200 (-)
G38458 NA other downstream 1777164 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3014794 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2413498 6052364 ~ 6063817 (-)
G39487 NA other upstream 2816855 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2999614 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4252623 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5473575 9112441 ~ 9152405 (-)

Expression


Co-expression Network