G38836


Basic Information

Item Value
gene id G38836
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3757717 ~ 3760103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48407
GGGGGGGCTTCCCCTGCAGCTTCTCAATATCAGTGTGGACCATTGGGATGCGAGGGTCATCATAGCTGATCacctgcctgagagagagacaacagaAGGGACTCTGTTATTAACCATCTCTGAACCTCCTCCCAATCAGCAGATGGCCGAGTGAGGAAAGTGGACTGACCAGCTGACGTTATGCGGCCGCAAGACAACGTGGCGATAGGCTCCGGACAGGGAGTAGTCCCGGATGCGGTGTCGCATGTTGTCAATGTCCAGACCGTCTGCCTTCAGCATCTCCCTGTACCCCTCACTGTGGTGGGAGGGATAGATGACATCAAAACCAGGCAGGGGCATAACAATGTCATGTATGGAGTGGCTCTCAGCCTCAGCTTTGGAGAGCAGAACTGCCGTGCCTGTAAGAAACATTAAATCGCACTTGGATTGTACTGGATCATAACCCACCCTTTCCAGCTACATGGTGTCTGTACTGCCTTTCCCAGCCACTGCACAGTACCTTACACTCACCTAAGTCCGCACATATTTTATcttaattcttgtttttttaaacaatctggTCTGTTTACCGTTTAAAAAagcaactgtgggacctcccaaaGTATAGGTTGCCCCGCCTCACCTCCACGCAGTACCAGGTCCCCTGGCACAGCAATCAGCCCGAATGCCTCAATGCGTCGGCTCACCATGCAGTTCCATACGAAGCTCTGATAGCTGTGTATGTACATCAGCCGGTTATTGCGGGGGATCTGTGGGACACCACAGGGGCACTGAGTCAGTGATACACACCACACTGAGACATGCCCAAACGCACTCTGAGGCATTCCCTCACCAGACCAAAGGCAGTGACAATGTTGTTCTTGCCGTGTCTAGCCAGGCCACGCAGCAGCTGCCCCTCCACACATCGCTTCACCGGGAGCTTCCTCAGTGCTGCCTCAGGGTCCTGGGACCGGGCCCACTCCTCCCGGCAACGCACCAGATAACCTTTTTCTGCTGAGGGGGGGCAGTGTAAGAGAGAGTTGTGAGGGGGACAAGACAGTGAGAGATTGAGGGAGTGAGAGGGGAAAATGTAAGAAAGGGAAGGGAGAAAGACAGAAGAAGAGAGACCGATAATAGAGACACTTAGGGAGGTAAAGACTGACAGAGGAAGGGAACATAGCGAGAAACAGGGGCACAGATTATGACAGAAGGATGAAACAATGAAGAGCAGGGGCAGATTACAGCATTAGCACAGGAAATGGAGTGAAGGGGAACCAGCagagaacaaaatattaaagGTTGACATGAAGGGTGCAGTGAATCCAATGACAGCAAATAAACTACCTCCAGGGCGGGGCTTCAGGATCAAATCCATCACCTCTTTCCAACTGTTCTGCAGGATTGCCCTGATTGACAGGCAAAGAAACACAATCAGCTGGATCTAATACAGGGTTATTTTTATCCACATACTCTTACCTGTCCCTCCTGACACAACCCTTTACCTGTCCCCCCTGACCCAGCCCTGCAGGTACTCCTTACCTGCCAACCTGGTATGTGGGCACAGCTGTAGTGCCAAAGCGCTGCATGCCGTAGTAGTTGATGAAACCGGTGTCCCTTAGGGAGGTCATGGCCTGCTCCACCTGCTGATCAGAGCCAGAGATATTCCTGCAGAGAAATgtccattacacacacaaacacaaagacacctCTGAGCCACAGATAATCCTGCAAAGAGAcatcaatcacacacacacagagacgcagacacaaacagaaacaactaGAGCTAGAGATATTCCCAACAAAACAGACAACTTATTTCTTAAGCAGCACCACTCTGACCTGATCACCACAGTGAAGTGATTCCCCTGTAGCTCCCCCAGCTTCAGAGGGTGTTTCTTGTAGCTGAAGTTTCCCAGTTTGAAGTTCATCAGGCACTTGTTGAGATGCGACAGTCTCTGAGCACTGATCCTGCACAGTGATTGTGGGTGAGGGgagagtggaaaaaaacacaaataacttcTAAAATCATGATTGTATGCGTCATTTTGGGTTTGCTGTAGTGTATAAGATGTAAAGCACTCTTCCAGATAatttctatcatataagcaacttttaaaacttcaaAATTATGACGGATGTCAAAAGCTAGCATAATGCAATACATCCTGAAATTGTGAAAGAGCATCATAAACTCCTGGATAGAAAAACTACAAATTCACAAGATGCGTCTTCCCCACAGCAACTTGAGCCATTATTTTGTCATGTTCTTACTcattgatagtaat

Function

NR:

description
PREDICTED: SWI/SNF complex subunit SMARCC2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48407 True 2267 lncRNA 0.49 2 3757717 3760103

Neighbor

gene id symbol gene type direction distance location
AMCG00012669 NA coding upstream 146542 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 279790 3469070 ~ 3477927 (+)
AMCG00012661 NA coding upstream 571294 3186010 ~ 3186423 (+)
AMCG00012660 NA coding upstream 573166 3184180 ~ 3184551 (+)
AMCG00012659 guca1a coding upstream 575815 3177398 ~ 3181902 (+)
AMCG00012675 LOC108428417 coding downstream 126035 3886138 ~ 3900561 (+)
AMCG00012679 trabd coding downstream 374485 4134588 ~ 4158381 (+)
AMCG00012680 NA coding downstream 401397 4161500 ~ 4183082 (+)
AMCG00012687 actr6,arp6 coding downstream 553779 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 560870 4320973 ~ 4329154 (+)
G38824 NA non-coding upstream 13391 3739791 ~ 3744326 (+)
G38818 NA non-coding upstream 85003 3672474 ~ 3672714 (+)
G38766 LOC103376870 non-coding upstream 116433 3554322 ~ 3641284 (+)
G38775 NA non-coding upstream 138523 3618856 ~ 3619194 (+)
G38742 NA non-coding upstream 326390 3430055 ~ 3431327 (+)
G38838 NA non-coding downstream 10733 3770836 ~ 3772238 (+)
G38843 NA non-coding downstream 31373 3791476 ~ 3793774 (+)
G38845 LOC103376870 non-coding downstream 34978 3795081 ~ 3882418 (+)
G38882 NA non-coding downstream 202260 3962363 ~ 3962573 (+)
G38886 NA non-coding downstream 214262 3974365 ~ 3976617 (+)
AMCG00012641 NA other upstream 2176329 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2918451 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 423772 4183875 ~ 4251594 (+)
G38954 NA other downstream 610210 4370313 ~ 4373574 (+)
G39297 NA other downstream 1792314 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 2047743 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2293045 6053148 ~ 6056832 (+)

Expression


Co-expression Network