G38843


Basic Information

Item Value
gene id G38843
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3791476 ~ 3793774 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48415
gtgcattgtgggatttgCATGAagttttggtgtatttttttttctctctctacataatggaaaacctgcatAATTACTTATTCCAgtcttctcttttaaaaacaattgaattTTTTAACACGAtgcacctggattgtattagagCAGCCCTTCTCACAGATGGGAGAAAAGTGGGAGTTCACTCTTGTTTAAACACGGAATATTTGGTGGCGCTGCAAAGATCTCCATTTTGTACAGATGACCCCGCACTTTCTCAGAAGACAGGATCAGTAAAGAGCAATGTGTGTATTCAGAGAAGACCACGTCCGCTCCCTGACATCAGCAAATACTAATATTCAATTTGtcattctaaaaaaaaaaaaaaaattggagcATCTGGAGAAGAATAAAGGAATCATTATGAGGGATCaatcctaataaaaataattcctgacgaGGATGAACACAACCAGTTGGTTGACAAAGTAGAGGAGTTTGAGGGATTTTCAAATGTGTGAAGCATTTTCATAATGAGGTGGCGAAAGAAGTAAAACGAGGAAAACTTAACAAAATGAAGACTACAGCAGAATTCTAAGTGCTTCATCAAATTGAAACATTGTACAGatcactaataaatacatttctgaatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48415 True 631 lncRNA 0.36 4 3791476 3793774

Neighbor

gene id symbol gene type direction distance location
AMCG00012669 NA coding upstream 180301 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 313549 3469070 ~ 3477927 (+)
AMCG00012661 NA coding upstream 605053 3186010 ~ 3186423 (+)
AMCG00012660 NA coding upstream 606925 3184180 ~ 3184551 (+)
AMCG00012659 guca1a coding upstream 609574 3177398 ~ 3181902 (+)
AMCG00012675 LOC108428417 coding downstream 92364 3886138 ~ 3900561 (+)
AMCG00012679 trabd coding downstream 340814 4134588 ~ 4158381 (+)
AMCG00012680 NA coding downstream 367726 4161500 ~ 4183082 (+)
AMCG00012687 actr6,arp6 coding downstream 520108 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 527199 4320973 ~ 4329154 (+)
G38838 NA non-coding upstream 19238 3770836 ~ 3772238 (+)
G38836 NA non-coding upstream 31373 3757717 ~ 3760103 (+)
G38824 NA non-coding upstream 47150 3739791 ~ 3744326 (+)
G38818 NA non-coding upstream 118762 3672474 ~ 3672714 (+)
G38766 LOC103376870 non-coding upstream 150192 3554322 ~ 3641284 (+)
G38845 LOC103376870 non-coding downstream 1307 3795081 ~ 3882418 (+)
G38882 NA non-coding downstream 168589 3962363 ~ 3962573 (+)
G38886 NA non-coding downstream 180591 3974365 ~ 3976617 (+)
G38964 NA non-coding downstream 723362 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 1155466 4949240 ~ 4955867 (+)
AMCG00012641 NA other upstream 2210088 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2952210 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 390101 4183875 ~ 4251594 (+)
G38954 NA other downstream 576539 4370313 ~ 4373574 (+)
G39297 NA other downstream 1758643 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 2014072 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2259374 6053148 ~ 6056832 (+)

Expression


Co-expression Network