G38886


Basic Information

Item Value
gene id G38886
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3974365 ~ 3976617 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48469
TtagcagttatttattttgcaatgttataaaatacaacaatgtgATTGGCTCCTCAAAACATGAGGCTATACCACTGGTTTTTACTCCTggtttttcaataaaaaaaaaagaaagaaaaagtgaacTCCATTTGCTATTGGGTTGAGCAAGACTCTCCGTCTGCTGTTGGTTAATCTCATGCTTGTACTatagaaggaaacaaaatgtcttGCCATTGGCTGTATCCTGTATCCTCTGTTCTCATCCCCAACCcagaataaagaaaagaaacagtaCAAAATAAGTCATAACCAAAACCTTTCCACCATTTTCTTGGTCATCCTACACAGTAAGAACAGTTTAAGCCATTGGCTCTGGAGTAAGAAGGGTGATGGCTATTGGCTGTCCTCCTCCTTTTCATGATGACAAAACAGTGAGAGGTCCATCTTTGTTTTTGGCCATGCCttgcttttgtttagttttttttttcttgcttttgccCCCTGTCTTCAGGTCATTCGTCTTTTCCTTGTGGAGTTGCTACAGTTGCCatatttacaaacatgagtTTTTGAATTAGCCTCCACAAAAAGGAAGCTCAGCAGCCAACATTTTAGGTTTCTTTCCCTGTTATGAACAGAAGCAGTGCTGTTGCCTTGAAATCCAAAAGGTGAATTGACACAGTCCACATTCATTCACCGTTACAGAATAACCCACCCACCAAGTGCTTTGTCAGCTTCCCAAACTATAACATTACCCAATGTATTAATCTCCATACCCCTGGGTATGCCATAGGTAAAATACATTATCTTCACCATAAACAGTTCAGTGGGCTATTTAAATTACCCCTAATCCCTAGGACAGGGATGGGCAACTCTGGTCCTTAAGGATCAGATTCCTACAGGGTTTAGATGCACCTTTCAATTAGCAACTGATTAAAACTATTATGTGATGGGTGATTTACCtatccaaataaataattatgatctggtatggaatgaaaaccagaggaGCCTAGGGACCTTTGAGGCCTGCAGTTGCCATCCTTATTTAAGGCATTCACTTATTCTCAATAAACCCCTGTATTGGGCAGGTCAACTTTGGGAATGCAATTACCAGAGTTCAGGAATAGTTTTACCACCAGGTCTGCACTAAAATTTGAAACACCTCAATGAGCAATTTCTGGCAACtgggtaaataaaataataaaccattaaTTTACTGGgttcatatattttgtttagttttgcacACTATACTAACGATTTATTGACTAGCGTATATGATCAAATTTCTTTGAAGTTTGTAAGCTGATTGTTACAAATCATCTAAGAAAAAAAGCTTGATCAGATTTTTGGATCATTAAGCTACTGGCAAGTGTATATGAAATGTTTTTCCATGtttgttatgtatatatttttatctccaGGGTATTTTCTTGTTCTTTAGTAAATAACGCATCTTAATTTACATACTTACTACTCAGTATGTTttcctgattttatttgttgaaaaaataattcagcAACACCTGTTCTACTCAAACTACAAATTATTTTGAACCACCAAGTCATACAAACCATAACATCTAAATGGATATACCACAGATATCAAATCACTAGGTGATGCCACTTTTACACAAAATTTTTGGAATTAAACCATTATATATTCCTACAAGTTTCAAGTAATCATCAAACATTGTGCCTAAGTGTTTTCTAGCCCAATAAATATGAAAGACGtccatggaaaaaaaatattttcaaaatgattacTGAATTACCCTATTACTGCTAAAGCAGCTCtaacaactgttttttttaacttttaaatcaatgatTGTAAACCCATCCAAAATTAATGAATCATGAATCATGAATTAGTATTGTTgcattaaactaaaatgaatcaacatttcattttattttaggatttaCCAGTATAAAATTAATTGGATTTCAGAACAAAAACCACAAAGGTGTAAGCTAAAATTAGATCCGGATAATTTTTGATTAATGCATCTTTACCAATTAAAATTGAAACTCTGAACTTTTCATATAATGCCTGAAGCTTTCACGTACCTTttgaggccattcaccccagtGTAGGACTCAAGCAATATATagtatagatatatagatttgtatttgtatacattttgaatgatgaTAAAGTGTGGGGAACAGAAtactagtagtagtaacagAAAGGATTGTgtgataaaaacagaaaaacttgTTTCTCAAAAGAATCGGCTGCAggttaaattgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48469 True 2253 lncRNA 0.34 1 3974365 3976617

Neighbor

gene id symbol gene type direction distance location
AMCG00012675 LOC108428417 coding upstream 73804 3886138 ~ 3900561 (+)
AMCG00012669 NA coding upstream 363190 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 496438 3469070 ~ 3477927 (+)
AMCG00012661 NA coding upstream 787942 3186010 ~ 3186423 (+)
AMCG00012660 NA coding upstream 789814 3184180 ~ 3184551 (+)
AMCG00012679 trabd coding downstream 157971 4134588 ~ 4158381 (+)
AMCG00012680 NA coding downstream 184883 4161500 ~ 4183082 (+)
AMCG00012687 actr6,arp6 coding downstream 337265 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 344356 4320973 ~ 4329154 (+)
AMCG00012685 scyl2,LOC106576457,LOC107597030 coding downstream 353054 4329671 ~ 4348756 (+)
G38882 NA non-coding upstream 11792 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 91947 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 180591 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 202127 3770836 ~ 3772238 (+)
G38836 NA non-coding upstream 214262 3757717 ~ 3760103 (+)
G38964 NA non-coding downstream 540519 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 972623 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 1060930 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 1460216 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 1671157 5647774 ~ 5648107 (+)
AMCG00012641 NA other upstream 2392977 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3135099 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 207258 4183875 ~ 4251594 (+)
G38954 NA other downstream 393696 4370313 ~ 4373574 (+)
G39297 NA other downstream 1575800 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1831229 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2076531 6053148 ~ 6056832 (+)

Expression


Co-expression Network